##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936008.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 808053 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.09781660361387 33.0 31.0 34.0 30.0 34.0 2 32.22639604085376 34.0 31.0 34.0 30.0 34.0 3 32.11491325445237 33.0 31.0 34.0 30.0 34.0 4 35.78071735393594 37.0 35.0 37.0 35.0 37.0 5 32.04285114961519 37.0 35.0 37.0 0.0 37.0 6 33.86964345160528 37.0 35.0 37.0 17.0 37.0 7 35.550819067561164 37.0 35.0 37.0 32.0 37.0 8 35.80643843906278 37.0 35.0 37.0 35.0 37.0 9 37.79121419015832 39.0 38.0 39.0 35.0 39.0 10 37.33321824187275 39.0 37.0 39.0 34.0 39.0 11 37.3331563647434 39.0 37.0 39.0 34.0 39.0 12 37.336409864204455 39.0 37.0 39.0 35.0 39.0 13 37.337190753576806 39.0 37.0 39.0 34.0 39.0 14 38.59934063730968 40.0 38.0 41.0 34.0 41.0 15 38.73864585615053 40.0 38.0 41.0 35.0 41.0 16 38.650009343446534 40.0 38.0 41.0 35.0 41.0 17 38.645890801717215 40.0 38.0 41.0 35.0 41.0 18 38.48561171111301 40.0 38.0 41.0 35.0 41.0 19 38.25592628206318 40.0 37.0 41.0 34.0 41.0 20 38.25675296051126 40.0 37.0 41.0 34.0 41.0 21 38.165520083459874 40.0 36.0 41.0 34.0 41.0 22 38.20873383305303 40.0 36.0 41.0 34.0 41.0 23 38.21719862434766 40.0 36.0 41.0 34.0 41.0 24 38.166898705901716 40.0 36.0 41.0 34.0 41.0 25 37.89931972283996 40.0 36.0 41.0 34.0 41.0 26 37.929641991305026 40.0 36.0 41.0 34.0 41.0 27 37.92639344201432 40.0 36.0 41.0 34.0 41.0 28 37.8577543799726 40.0 36.0 41.0 34.0 41.0 29 37.81544651155308 40.0 36.0 41.0 34.0 41.0 30 37.60868779646879 40.0 35.0 41.0 33.0 41.0 31 37.509409655059756 40.0 35.0 41.0 33.0 41.0 32 37.306102446250435 40.0 35.0 41.0 33.0 41.0 33 37.06586944173216 40.0 35.0 41.0 32.0 41.0 34 36.82391501547547 40.0 35.0 41.0 31.0 41.0 35 36.695253900424845 40.0 35.0 41.0 31.0 41.0 36 36.55461832330305 40.0 35.0 41.0 30.0 41.0 37 36.48953100848583 40.0 35.0 41.0 30.0 41.0 38 36.36620122689972 40.0 35.0 41.0 30.0 41.0 39 36.26412500170162 40.0 35.0 41.0 29.0 41.0 40 36.20895164054833 40.0 35.0 41.0 29.0 41.0 41 36.09202490430702 39.0 35.0 41.0 29.0 41.0 42 36.07037533429119 39.0 35.0 41.0 29.0 41.0 43 35.99809665950129 39.0 35.0 41.0 28.0 41.0 44 35.91522090753948 39.0 35.0 41.0 28.0 41.0 45 35.881794882266384 39.0 35.0 41.0 27.0 41.0 46 35.77014255253059 39.0 35.0 41.0 27.0 41.0 47 35.69689611943771 39.0 35.0 41.0 27.0 41.0 48 35.63395594100882 39.0 35.0 41.0 26.0 41.0 49 35.57536696231559 39.0 35.0 41.0 27.0 41.0 50 35.46533333828351 39.0 35.0 41.0 26.0 41.0 51 34.51811205453107 37.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 5.0 8 20.0 9 30.0 10 34.0 11 22.0 12 21.0 13 18.0 14 31.0 15 42.0 16 63.0 17 122.0 18 249.0 19 498.0 20 793.0 21 1376.0 22 2150.0 23 3259.0 24 5555.0 25 8713.0 26 11797.0 27 12427.0 28 11897.0 29 11322.0 30 12070.0 31 14102.0 32 17755.0 33 25019.0 34 42411.0 35 58022.0 36 59499.0 37 90236.0 38 151035.0 39 267256.0 40 204.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.61614770318284 18.966453933095973 23.272483364333777 17.144914999387417 2 37.16971535282958 22.543447026370796 23.85152954076032 16.435308080039306 3 30.87297491624931 22.13196411621515 30.535002035757557 16.46005893177799 4 26.84056615098267 24.788101770552178 30.412980336685834 17.958351741779314 5 21.390923615158908 36.22212899401401 25.99705712372827 16.389890267098817 6 23.961670830997473 33.572921578163815 28.469172195388175 13.996235395450546 7 76.56465603122568 5.886495069011563 13.346401783051359 4.2024471167114035 8 78.42332124254226 5.186912244617617 12.5830855154303 3.8066809974098232 9 73.28962332916281 7.016618959399941 14.450289770596731 5.243467940840514 10 36.65366009407799 25.522830804415058 22.88117239834516 14.942336703161798 11 27.952374411084424 25.362816547924457 28.572507001397184 18.11230203959394 12 24.638482871791826 22.361033249056682 33.47614574786555 19.524338131285944 13 23.299214284211555 23.59832832747357 34.38771961740134 18.71473777091354 14 20.202882731702005 26.50185074493876 33.53616656333186 19.759099960027374 15 19.755511086525264 25.45278589399458 35.804582125182385 18.987120894297774 16 21.96737095215289 24.233930200123012 34.59884438273232 19.199854464991777 17 22.192851211492314 24.607296798601084 32.14269361044387 21.057158379462734 18 22.71336162355687 24.48230499732072 33.018750007734646 19.78558337138777 19 22.918298675953185 26.950831195478514 30.56482681210267 19.566043316465628 20 23.564667169108958 25.792120071331954 31.64594401604845 18.997268743510638 21 23.10368255547594 26.378715257538797 31.488281090473023 19.029321096512234 22 21.96266829032254 24.621528538350827 31.589017057049475 21.82678611427716 23 20.82338658479085 26.439602352815967 31.853356153618634 20.88365490877455 24 21.040946571573894 24.768053580643844 33.45993393997671 20.73106590780555 25 21.41047678803247 26.429206995085718 31.16453994973102 20.99577626715079 26 20.28282798281796 27.27234475956404 31.305619804641527 21.139207452976475 27 21.03352131605229 25.905107709519054 32.12672931107242 20.934641663356242 28 19.957973053747715 26.469055866385 32.92791438185367 20.64505669801362 29 20.92820644190418 25.642996189606375 32.15915292685009 21.26964444163935 30 21.808099221214448 25.312696073153617 32.10767115523363 20.771533550398303 31 22.16587278309715 25.6199778974894 30.77558031465758 21.438569004755877 32 21.96699968937681 26.440468632626818 30.921610339915823 20.670921338080547 33 21.804262839194955 26.208181889059258 30.187005060311638 21.80055021143415 34 20.841702215077476 27.534456279476714 30.215839802587208 21.408001702858602 35 20.68725690022808 27.233114659558222 29.478635683550458 22.60099275666324 36 21.15999816843697 28.819396747490572 28.809867669571176 21.210737414501278 37 20.320201768943374 29.00044922795906 29.818217369405225 20.861131633692345 38 20.34198251847342 28.965303018490125 29.275678699293238 21.41703576374322 39 20.75160911474866 28.266586473907036 29.27543119077585 21.70637322056845 40 21.641030971978324 27.580740372228057 29.57033758924229 21.207891066551326 41 19.64957744108369 27.46998031069744 29.56848127536189 23.31196097285698 42 20.916697295845694 27.758203979194434 28.94216097211445 22.382937752845418 43 21.280411062145678 26.649242067042632 29.7452023567761 22.32514451403559 44 21.048619335612887 27.194874593621954 29.748419967502134 22.00808610326303 45 21.18499652869304 26.85789174719975 29.1766752923385 22.78043643176871 46 21.567397188055732 27.280265032120415 28.55010748057368 22.602230299250174 47 20.900856750732935 26.951697475289365 29.702754646044255 22.44469112793344 48 20.498160392944524 26.352108091919714 30.214602260000273 22.935129255135493 49 21.00679039617451 26.005224904802038 30.37709160166474 22.610893097358716 50 19.96081940169766 26.243575607045578 30.677195678996306 23.118409312260457 51 19.77407422532928 26.103485786204615 29.668227207868792 24.454212780597313 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 507.0 1 829.5 2 1152.0 3 8939.0 4 16726.0 5 11193.5 6 5661.0 7 5443.5 8 5226.0 9 5203.5 10 5181.0 11 5118.5 12 5056.0 13 5019.0 14 4982.0 15 4768.0 16 4554.0 17 4338.5 18 4123.0 19 4221.5 20 4320.0 21 4195.0 22 4070.0 23 4189.5 24 4309.0 25 5119.0 26 6824.5 27 7720.0 28 9395.5 29 11071.0 30 12540.5 31 14010.0 32 16354.0 33 18698.0 34 20872.0 35 23046.0 36 25390.0 37 27734.0 38 29556.0 39 31378.0 40 35823.0 41 40268.0 42 44573.5 43 48879.0 44 56136.5 45 63394.0 46 66837.5 47 70281.0 48 68901.0 49 67521.0 50 62571.5 51 57622.0 52 53645.5 53 49669.0 54 46205.0 55 42741.0 56 39415.5 57 36090.0 58 33532.5 59 30975.0 60 29109.0 61 27243.0 62 24682.5 63 22122.0 64 18468.5 65 14815.0 66 12692.0 67 10569.0 68 8945.0 69 7321.0 70 5985.0 71 4649.0 72 4079.0 73 3509.0 74 3002.5 75 1830.0 76 1164.0 77 855.0 78 546.0 79 468.0 80 390.0 81 250.5 82 111.0 83 85.5 84 60.0 85 92.5 86 125.0 87 75.5 88 26.0 89 15.5 90 5.0 91 4.5 92 4.0 93 2.5 94 1.0 95 2.0 96 3.0 97 2.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 808053.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.768644920507626 #Duplication Level Percentage of deduplicated Percentage of total 1 74.35863785669235 26.597077142686455 2 9.290180406152341 6.645943283902408 3 3.8316299539137693 4.111566338649679 4 2.1493516194232383 3.0751757953787138 5 1.4428018569874692 2.580353365661691 6 1.0643413790665162 2.284202931722018 7 0.8076192198142848 2.0221211573160183 8 0.6357223166108635 1.8191140648717203 9 0.5559655188248487 1.7897519907802633 >10 5.682649462686986 42.34150322979268 >50 0.15482859555551245 3.3621477510725803 >100 0.02381977827312195 1.6498752477772765 >500 0.0014011634278306405 0.32739398712347517 >1k 7.005817139153202E-4 0.2667515494014078 >5k 3.502908569576601E-4 1.1270221638636275 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8995 1.1131695569473785 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1071 0.13254081106066062 No Hit GCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC 1058 0.13093200569764607 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.4750851738685457E-4 0.0 0.0 0.09120688865705591 0.0 2 2.4750851738685457E-4 0.0 0.0 0.38202939658661006 0.0 3 2.4750851738685457E-4 0.0 0.0 0.5750860401483566 0.0 4 2.4750851738685457E-4 0.0 0.0 0.8013088250399417 0.0 5 2.4750851738685457E-4 0.0 0.0 1.4198326099896912 0.0 6 2.4750851738685457E-4 0.0 0.0 2.1329046485812193 0.0 7 2.4750851738685457E-4 0.0 0.0 2.692397652134204 0.0 8 2.4750851738685457E-4 0.0 0.0 3.5449407402732245 0.0 9 2.4750851738685457E-4 0.0 0.0 3.956547404687564 0.0 10 2.4750851738685457E-4 0.0 0.0 4.752906059379768 0.0 11 2.4750851738685457E-4 0.0 0.0 5.618567098940292 0.0 12 2.4750851738685457E-4 0.0 0.0 6.338940638794733 0.0 13 2.4750851738685457E-4 0.0 0.0 6.67790355335603 0.0 14 2.4750851738685457E-4 0.0 0.0 6.842744225935675 0.0 15 2.4750851738685457E-4 0.0 0.0 7.04693875277983 0.0 16 2.4750851738685457E-4 0.0 0.0 7.462258044954972 0.0 17 3.712627760802819E-4 0.0 0.0 7.970145522632798 0.0 18 3.712627760802819E-4 0.0 0.0 8.535083713568293 0.0 19 3.712627760802819E-4 0.0 0.0 8.879986832546875 0.0 20 3.712627760802819E-4 0.0 0.0 9.226498756888471 0.0 21 4.950170347737091E-4 0.0 0.0 9.659143645280693 0.0 22 4.950170347737091E-4 0.0 0.0 10.1146830715312 0.0 23 4.950170347737091E-4 0.0 0.0 10.615269047946112 0.0 24 4.950170347737091E-4 0.0 0.0 11.015861583336736 0.0 25 4.950170347737091E-4 0.0 0.0 11.367571186543456 0.0 26 4.950170347737091E-4 0.0 0.0 11.696014989115813 0.0 27 4.950170347737091E-4 0.0 0.0 12.047105821029065 0.0 28 4.950170347737091E-4 0.0 0.0 12.404260611618298 0.0 29 4.950170347737091E-4 0.0 0.0 12.797056628711236 0.0 30 4.950170347737091E-4 0.0 0.0 13.242200697231494 0.0 31 6.187712934671364E-4 0.0 0.0 13.65801500644141 0.0 32 6.187712934671364E-4 0.0 0.0 14.06566153457756 0.0 33 6.187712934671364E-4 0.0 0.0 14.465140281639941 0.0 34 6.187712934671364E-4 0.0 0.0 14.828235276646458 0.0 35 6.187712934671364E-4 0.0 0.0 15.222516344843717 0.0 36 7.425255521605638E-4 0.0 0.0 15.59526417202832 0.0 37 7.425255521605638E-4 0.0 0.0 16.004519505527483 0.0 38 7.425255521605638E-4 0.0 0.0 16.406968354798508 0.0 39 7.425255521605638E-4 0.0 0.0 16.831692970634354 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCCAACG 20 7.0320413E-4 45.0 1 TACGTCG 35 1.2113378E-7 45.0 1 CGTTTTT 4950 0.0 43.590908 1 CGTTATT 610 0.0 42.786884 1 GTACGAG 45 1.9270374E-8 40.0 1 CTTACGG 45 1.9270374E-8 40.0 2 AATGCGG 120 0.0 39.374996 2 TACGAAT 75 0.0 39.0 12 AAGGGCG 320 0.0 38.671875 5 GTTGCGT 35 6.245986E-6 38.571426 18 GCGTATG 65 9.094947E-12 38.07692 1 TTACGGG 270 0.0 37.500004 3 AACGATA 30 1.139622E-4 37.499996 10 CACGTAG 30 1.139622E-4 37.499996 1 ATACCGG 30 1.139622E-4 37.499996 2 TACGGGA 290 0.0 37.241383 4 GCTACGA 85 0.0 37.058823 10 CTTGCGG 140 0.0 36.964283 2 ACGGGAC 250 0.0 36.9 5 GATACGA 25 0.002106739 36.0 43 >>END_MODULE