SRR2936006.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936006.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	356436
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8322	2.334780998552335	No Hit
GCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	1291	0.3621968600253622	No Hit
CCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	1089	0.3055246944753055	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	987	0.27690805642527694	No Hit
CTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGCT	872	0.24464419980024465	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCC	857	0.24043587067524044	No Hit
TCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	637	0.17871371017517873	No Hit
ACTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	408	0.11446655220011445	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGAACG	30	2.1612723E-6	45.000004	1
ATTGAGC	30	2.1612723E-6	45.000004	12
CGTGGTT	20	7.0267305E-4	45.0	19
ACCGGCG	25	3.8853723E-5	45.0	20
ACACGCG	20	7.0267305E-4	45.0	34
TTGTGCG	20	7.0267305E-4	45.0	1
TTTACGG	40	6.7921064E-9	45.0	2
TTTACCG	20	7.0267305E-4	45.0	13
CATGCGG	25	3.8853723E-5	45.0	2
GTTTACG	25	3.8853723E-5	45.0	1
GACCGAG	20	7.0267305E-4	45.0	1
TGACGCA	20	7.0267305E-4	45.0	22
ACGGGCC	20	7.0267305E-4	45.0	5
ATCCGGG	40	6.7921064E-9	45.0	3
TAACCGG	25	3.8853723E-5	45.0	2
GGGCGGA	35	1.208773E-7	45.0	7
AGCGATT	20	7.0267305E-4	45.0	21
TAGGGCG	45	3.8380676E-10	45.0	5
GCGATGC	25	3.8853723E-5	45.0	9
CTCGCGG	20	7.0267305E-4	45.0	3