SRR2936004.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936004.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	960830
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10293	1.071261305329767	No Hit
GCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC	1244	0.1294713945234849	TruSeq Adapter, Index 19 (95% over 21bp)
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1201	0.12499609712436123	No Hit
CCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTCTGC	1132	0.11781480594902323	TruSeq Adapter, Index 19 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCGTCTTC	1096	0.1140680453358034	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCC	1046	0.1088642111507759	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATGTGCTTTCGTATGCCG	988	0.10282776349614395	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGATTCG	40	6.8139343E-9	45.000004	10
TATTACG	25	3.8903265E-5	45.0	1
TCGACAG	30	2.1651285E-6	44.999996	1
CGTTTTT	6385	0.0	42.991383	1
CGTTATT	775	0.0	42.967743	1
TATAGCG	50	1.0804797E-9	40.5	1
ATGTACG	40	3.457426E-7	39.375004	1
AGCGAAG	75	0.0	39.0	1
CTTACGG	75	0.0	39.0	2
CTAACGG	35	6.247219E-6	38.571426	2
TCGGAAT	35	6.247219E-6	38.571426	12
CGACAGG	100	0.0	38.25	2
CACGACC	65	9.094947E-12	38.07692	27
GTAGACG	65	9.094947E-12	38.07692	1
GCGATTC	65	9.094947E-12	38.07692	9
TACGGGC	180	0.0	37.5	4
CGTAAGG	150	0.0	37.5	2
TACGCGG	60	1.546141E-10	37.499996	2
CAAGCGT	30	1.1397827E-4	37.499996	35
ATCGATT	30	1.1397827E-4	37.499996	11