##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2936003.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 172645 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.873167482406092 33.0 31.0 34.0 30.0 34.0 2 32.02718873989979 33.0 31.0 34.0 30.0 34.0 3 31.864791914043266 33.0 31.0 34.0 30.0 34.0 4 35.6277332097657 37.0 35.0 37.0 33.0 37.0 5 32.32756813113615 37.0 35.0 37.0 19.0 37.0 6 33.95257319933969 37.0 35.0 37.0 19.0 37.0 7 35.45239074401228 37.0 35.0 37.0 32.0 37.0 8 35.640076457470535 37.0 35.0 37.0 33.0 37.0 9 37.590118451157 39.0 37.0 39.0 35.0 39.0 10 37.34407020185931 39.0 37.0 39.0 34.0 39.0 11 37.2573025572707 39.0 37.0 39.0 34.0 39.0 12 36.93115352312549 39.0 35.0 39.0 33.0 39.0 13 36.61023487503258 39.0 35.0 39.0 33.0 39.0 14 37.71409539807119 40.0 36.0 41.0 33.0 41.0 15 37.85840308146775 40.0 36.0 41.0 33.0 41.0 16 38.018089142459964 40.0 36.0 41.0 34.0 41.0 17 37.95620492918996 40.0 36.0 41.0 33.0 41.0 18 37.77834284224854 39.0 36.0 41.0 33.0 41.0 19 37.50726635581685 39.0 36.0 41.0 33.0 41.0 20 37.21717396970662 39.0 35.0 41.0 33.0 41.0 21 37.23186886385357 39.0 35.0 41.0 33.0 41.0 22 37.22535839439312 39.0 35.0 41.0 33.0 41.0 23 37.198227576819484 39.0 35.0 41.0 33.0 41.0 24 37.149381679168236 39.0 35.0 41.0 33.0 41.0 25 36.99965825827565 38.0 35.0 41.0 33.0 41.0 26 36.96196240841032 38.0 35.0 41.0 33.0 41.0 27 36.881282400301195 38.0 35.0 41.0 33.0 41.0 28 36.74358365431956 38.0 35.0 41.0 33.0 41.0 29 36.73330823365866 38.0 35.0 41.0 33.0 41.0 30 36.5192562773321 38.0 35.0 41.0 32.0 41.0 31 36.24098583799125 38.0 35.0 40.0 31.0 41.0 32 35.85129601204785 38.0 35.0 40.0 30.0 41.0 33 35.47208433490689 38.0 35.0 40.0 27.0 41.0 34 35.03897014104086 38.0 35.0 41.0 24.0 41.0 35 34.938805062411305 38.0 35.0 41.0 23.0 41.0 36 34.62102001216369 38.0 35.0 40.0 21.0 41.0 37 34.502962726983114 38.0 35.0 40.0 21.0 41.0 38 34.31380578644038 38.0 34.0 40.0 20.0 41.0 39 34.335984245127285 38.0 34.0 40.0 20.0 41.0 40 34.3152538445944 38.0 34.0 40.0 20.0 41.0 41 34.14747603463755 37.0 34.0 40.0 18.0 41.0 42 34.129201540733874 37.0 34.0 40.0 18.0 41.0 43 33.98459845347389 37.0 34.0 40.0 18.0 41.0 44 33.9211677140954 37.0 34.0 40.0 18.0 41.0 45 33.85100640041704 37.0 34.0 40.0 18.0 41.0 46 33.709195169278 37.0 34.0 40.0 18.0 41.0 47 33.52311969648701 37.0 33.0 40.0 17.0 41.0 48 33.4933649975383 36.0 33.0 40.0 17.0 41.0 49 33.53264791914043 36.0 33.0 40.0 17.0 41.0 50 33.38317356425034 36.0 33.0 40.0 15.0 41.0 51 32.34131309913406 35.0 31.0 39.0 13.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 9.0 10 6.0 11 1.0 12 2.0 13 4.0 14 9.0 15 5.0 16 13.0 17 27.0 18 83.0 19 149.0 20 386.0 21 615.0 22 987.0 23 1449.0 24 1936.0 25 2763.0 26 3780.0 27 3998.0 28 3850.0 29 3606.0 30 3594.0 31 4319.0 32 5350.0 33 7609.0 34 13246.0 35 19347.0 36 12074.0 37 16159.0 38 27041.0 39 40185.0 40 41.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.20130904457123 15.73691679457847 21.33510961800226 21.72666454284804 2 36.83338642879898 27.29531697992991 21.235483217005996 14.63581337426511 3 24.234122042341223 26.696979350690725 35.58110573720641 13.48779286976165 4 23.77074343305627 20.603550638593646 40.59833762923919 15.027368299110893 5 24.260766312375104 31.334240783109852 29.79061079092936 14.61438211358568 6 20.84566596194503 33.1645862897854 32.62996321932289 13.359784528946683 7 64.46986590981494 5.317269541544788 25.598192823423787 4.614671725216485 8 64.36618494598743 10.54765559384865 19.31477888151988 5.771380578644038 9 60.50855802369023 6.132815893886299 20.874047901763735 12.484578180659735 10 40.344058617394076 21.26038981725506 26.40099626400996 11.994555301340903 11 33.021518144168674 19.659416722175564 32.315444988270734 15.003620145385039 12 28.236554780039967 17.022213212082598 36.56404761215211 18.177184395725334 13 22.00005792232616 25.073416548408584 38.72455037794318 14.201975151322078 14 15.725332329346347 31.763445219960033 34.64739783949724 17.863824611196385 15 11.600683483448696 22.403197312404068 49.94062961568537 16.05548958846187 16 14.159691853224826 20.180138434359524 42.90827999652466 22.75188971589099 17 14.66014075125257 21.64499406296157 38.67705407049147 25.017811115294393 18 16.502649946421847 21.09936575052854 40.39850560398506 21.999478699064554 19 18.51776767354977 24.268296214775987 36.26864374873295 20.945292362941295 20 22.317472269686352 23.1556083292305 38.094934692577255 16.431984708505894 21 18.707173680094993 27.857163543687914 36.24895015783834 17.186712618378756 22 15.089924411364361 22.714819427148196 37.94839120739089 24.246864954096555 23 16.477164122911176 26.337281705233284 35.52723797387703 21.65831619797851 24 18.786527266935042 22.063193257841235 37.258536302817916 21.891743172405803 25 15.139158388600887 26.743896434880828 36.40128587564077 21.715659300877522 26 15.816849604680124 24.98769150569087 38.348055257899155 20.84740363172985 27 19.75093399750934 26.12934055431666 35.37374380955139 18.74598163862261 28 14.214138839815806 23.91554924845782 43.298097251585624 18.57221466014075 29 18.27796924324481 20.13495901995424 41.99542413623331 19.591647600567637 30 19.636247791711313 24.924556170175794 38.65967737264329 16.779518665469606 31 23.460858988096962 21.80254279011845 33.633177908424805 21.103420313359784 32 24.71545657273596 24.95004199368647 34.04616409395002 16.28833733962756 33 22.580439630455558 21.668162993425817 33.12056532190333 22.630832054215297 34 23.10695357525558 22.12632859335631 34.2228271887399 20.543890642648208 35 20.876944018071768 21.795592110979175 34.91673665614411 22.410727214804947 36 25.02128645486403 21.20304671435605 34.28538330099337 19.490283529786556 37 21.446899707492253 22.615193026151932 38.32430710417331 17.613600162182514 38 16.935908946103275 23.85473080598917 36.67062469228764 22.538735555619912 39 21.345535636711173 22.861942135596166 36.70943265081525 19.083089576877406 40 22.1066350024617 20.08224970314808 37.534246575342465 20.27686871904776 41 20.214312606794287 21.55695212719743 31.37826175099192 26.850473515016365 42 21.20130904457123 19.458426250398215 35.757189608734684 23.583075096295865 43 22.72350777607229 20.75530713313447 32.00440209678821 24.51678299400504 44 20.388658808537752 23.46838889049784 34.39717339048336 21.745778910481047 45 18.990993078282024 23.171826580555475 33.1362043499667 24.700975991195804 46 24.15361000897796 24.440904746734628 32.07217121839613 19.33331402589128 47 18.420458165599932 22.943033392221032 38.298242057401026 20.338266384778013 48 21.346694083234382 21.032175852182224 34.06238234527499 23.558747719308407 49 19.30609053259579 17.585797445625417 39.59280604709085 23.515305974687944 50 19.628138666048827 20.599496075762403 35.0841321787483 24.68823307944047 51 19.06165831619798 21.869153465203162 31.033044687074636 28.036143531524228 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 355.0 1 352.5 2 350.0 3 3362.0 4 6374.0 5 4058.0 6 1742.0 7 1795.0 8 1848.0 9 1885.0 10 1922.0 11 1956.0 12 1990.0 13 1918.5 14 1847.0 15 1659.5 16 1472.0 17 1408.5 18 1345.0 19 1254.5 20 1164.0 21 1066.5 22 969.0 23 1037.0 24 1105.0 25 1061.0 26 1185.0 27 1353.0 28 1459.5 29 1566.0 30 1834.0 31 2102.0 32 2465.0 33 2828.0 34 2971.0 35 3114.0 36 3668.0 37 4222.0 38 4950.5 39 5679.0 40 5973.0 41 6267.0 42 8243.0 43 10219.0 44 11889.0 45 13559.0 46 18820.5 47 24082.0 48 20871.0 49 17660.0 50 17587.0 51 17514.0 52 14285.0 53 11056.0 54 9265.5 55 7475.0 56 6452.0 57 5429.0 58 4922.5 59 4416.0 60 4193.5 61 3971.0 62 3351.5 63 2732.0 64 2150.5 65 1569.0 66 1269.5 67 970.0 68 739.5 69 509.0 70 405.5 71 302.0 72 296.0 73 290.0 74 212.5 75 81.5 76 28.0 77 41.5 78 55.0 79 45.5 80 36.0 81 21.0 82 6.0 83 3.5 84 1.0 85 0.5 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 172645.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.60728662863101 #Duplication Level Percentage of deduplicated Percentage of total 1 77.64697279906405 30.75385907498045 2 9.75723895875987 7.729155202872947 3 3.664814273179292 4.354600480755307 4 1.7768353319684116 2.8150250514060646 5 1.0821877742029833 2.1431260679428887 6 0.6595495758993858 1.5673781459063396 7 0.5352442234571512 1.4839699962350488 8 0.36999122550453345 1.1723478814909207 9 0.377303305059959 1.3449564134495642 >10 4.023106171395145 34.04558487068841 >50 0.06434630008774495 1.69944104955255 >100 0.030710734132787368 2.729879231949955 >500 0.004387247733255338 1.061137015262533 >1k 0.007312079555425563 7.099539517507022 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4002 2.3180514929479568 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGC 2611 1.5123519360537518 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCG 2558 1.4816531031886242 No Hit GAATCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTC 1808 1.0472356569839845 No Hit GCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC 1278 0.7402473283327059 RNA PCR Primer, Index 35 (95% over 24bp) CCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC 755 0.4373135625126705 RNA PCR Primer, Index 10 (95% over 23bp) GAATGACTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCT 558 0.32320657997625185 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTTTGTCT 519 0.3006168727736106 No Hit CTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGCT 477 0.27628949578615075 TruSeq Adapter, Index 10 (95% over 24bp) CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 470 0.27223493295490747 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTA 382 0.2212632859335631 No Hit GAACTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCT 334 0.19346056937646616 RNA PCR Primer, Index 35 (95% over 22bp) GAATGATCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTC 315 0.18245532740594864 No Hit TCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC 287 0.16623707608097543 RNA PCR Primer, Index 35 (95% over 24bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCC 276 0.15986562020330736 No Hit GAATAATACGGCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGC 264 0.15291494106403314 No Hit GAATAATACCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCG 253 0.1465434851863651 No Hit GCTAAGAGGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA 197 0.11410698253641867 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 189 0.10947319644356918 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0011584465232123721 0.0 0.0 0.3006168727736106 0.0 2 0.0011584465232123721 0.0 0.0 1.8685742419415563 0.0 3 0.0011584465232123721 0.0 0.0 2.3018332416229836 0.0 4 0.0011584465232123721 0.0 0.0 2.9580931970227926 0.0 5 0.0011584465232123721 0.0 0.0 5.284833038894842 0.0 6 0.0011584465232123721 0.0 0.0 6.0644675490167685 0.0 7 0.0011584465232123721 0.0 0.0 7.289524747313852 0.0 8 0.0011584465232123721 0.0 0.0 8.83605085580237 0.0 9 0.0011584465232123721 0.0 0.0 9.447710620058501 0.0 10 0.0011584465232123721 0.0 0.0 12.464884589765125 0.0 11 0.0011584465232123721 0.0 0.0 14.410495525500304 0.0 12 0.0011584465232123721 0.0 0.0 17.614758608705724 0.0 13 0.0011584465232123721 0.0 0.0 18.30982652263315 0.0 14 0.0011584465232123721 0.0 0.0 18.58901213472733 0.0 15 0.0011584465232123721 0.0 0.0 19.259752671667293 0.0 16 0.0011584465232123721 0.0 0.0 20.157548727156883 0.0 17 0.0011584465232123721 0.0 0.0 21.196096035216776 0.0 18 0.0011584465232123721 0.0 0.0 22.36149323756842 0.0 19 0.0011584465232123721 0.0 0.0 23.44753685308002 0.0 20 0.0011584465232123721 0.0 0.0 24.06556807321382 0.0 21 0.0011584465232123721 0.0 0.0 24.758898317356426 0.0 22 0.0011584465232123721 0.0 0.0 25.483506617625764 0.0 23 0.0011584465232123721 0.0 0.0 26.262561904486084 0.0 24 0.0011584465232123721 0.0 0.0 26.850473515016365 0.0 25 0.0011584465232123721 0.0 0.0 27.299371542761158 0.0 26 0.0017376697848185583 0.0 0.0 27.74711112398274 0.0 27 0.0017376697848185583 0.0 0.0 28.21512351936054 0.0 28 0.0017376697848185583 0.0 0.0 28.63216426771699 0.0 29 0.0017376697848185583 0.0 0.0 29.09554287700194 0.0 30 0.0017376697848185583 0.0 0.0 29.617423035709113 0.0 31 0.0017376697848185583 0.0 0.0 30.124243389614527 0.0 32 0.0017376697848185583 0.0 0.0 30.544180254279013 0.0 33 0.0017376697848185583 0.0 0.0 30.931101393031945 0.0 34 0.0017376697848185583 0.0 0.0 31.366677285759796 0.0 35 0.0017376697848185583 0.0 0.0 31.830055895044744 0.0 36 0.0017376697848185583 0.0 0.0 32.25115120623244 0.0 37 0.0017376697848185583 0.0 0.0 32.682672536129054 0.0 38 0.0017376697848185583 0.0 0.0 33.08233658663732 0.0 39 0.0017376697848185583 0.0 0.0 33.53818529352139 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGCGAT 35 1.2039163E-7 45.000004 31 CGGCGAG 35 1.2039163E-7 45.000004 31 ACGGGCA 35 1.2039163E-7 45.000004 5 TTGCGAG 35 1.2039163E-7 45.000004 1 GGCGATT 35 1.2039163E-7 45.000004 8 ACAACCA 20 7.016619E-4 45.0 24 GGTACCT 40 6.7575456E-9 45.0 8 ACACGGG 20 7.016619E-4 45.0 3 CGTATGG 20 7.016619E-4 45.0 2 CAAGTCG 20 7.016619E-4 45.0 1 CCGATTA 20 7.016619E-4 45.0 18 GCTGGTC 20 7.016619E-4 45.0 35 TAGACGC 20 7.016619E-4 45.0 37 TGTATAG 20 7.016619E-4 45.0 33 ATAGACG 20 7.016619E-4 45.0 36 TACGGGT 20 7.016619E-4 45.0 4 GGATACG 20 7.016619E-4 45.0 1 TGTGCGG 20 7.016619E-4 45.0 2 GCCATAT 20 7.016619E-4 45.0 45 GGAACTT 20 7.016619E-4 45.0 8 >>END_MODULE