SRR2936002.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2936002.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	572016
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3840	0.6713098934295545	No Hit
GAATCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTC	3017	0.5274327990825431	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCG	2776	0.4853011104584487	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGC	2535	0.44316942183435426	No Hit
GCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGC	1816	0.31747363710106014	No Hit
GAACTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCT	761	0.13303823669267992	No Hit
CTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGCT	678	0.11852815305865569	Illumina Single End Adapter 1 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCT	636	0.11118570109926995	No Hit
CCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGC	631	0.11031159967553356	No Hit
GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC	618	0.1080389359738189	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGATCG	25	3.888339E-5	45.000004	40
TTGTCGC	25	3.888339E-5	45.000004	38
TACGGGA	140	0.0	45.000004	4
TTGCGAC	25	3.888339E-5	45.000004	16
TGTCGCA	25	3.888339E-5	45.000004	39
CGGAACA	20	7.030312E-4	45.0	13
ACCGGTA	20	7.030312E-4	45.0	41
AACCCGT	20	7.030312E-4	45.0	43
GTCGTCG	20	7.030312E-4	45.0	42
ACCCGTT	20	7.030312E-4	45.0	44
ACGTAAG	20	7.030312E-4	45.0	1
GCTACGA	40	6.8048394E-9	45.0	10
GTGCGGT	20	7.030312E-4	45.0	31
TACGTTC	20	7.030312E-4	45.0	41
TGCGTTG	20	7.030312E-4	45.0	1
TGCGTCG	20	7.030312E-4	45.0	2
TACCGGA	20	7.030312E-4	45.0	21
TCCGATC	30	2.1635824E-6	44.999996	14
CCCCGTA	30	2.1635824E-6	44.999996	40
CATACGG	30	2.1635824E-6	44.999996	2