SRR2935998.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935998.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	982633
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTC	8280	0.8426340251141575	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCG	8155	0.8299131008219752	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGC	6758	0.6877440509325455	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6010	0.6116220399681264	No Hit
GCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC	2862	0.29125828259380665	No Hit
GAACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCT	2043	0.207910786631428	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCT	1522	0.15488997418161204	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTC	1322	0.13453649531412032	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTCTGTATTCGTA	1189	0.12100143186723833	No Hit
CCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC	1165	0.11855901440313932	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTCTGTATT	1114	0.11336887729192892	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGTACG	25	3.8903905E-5	45.000004	1
TTTACGT	20	7.032787E-4	45.0	24
GCTATCG	20	7.032787E-4	45.0	15
TACGGAC	20	7.032787E-4	45.0	4
CAATCGA	55	1.8189894E-12	45.0	41
GAGATCG	35	1.2116834E-7	45.0	33
TAATACG	265	0.0	43.301888	4
CGATGAA	1325	0.0	41.773586	19
CCGATGA	1245	0.0	41.566265	18
CGTTTTT	2800	0.0	41.383926	1
GTCGAAG	60	3.6379788E-12	41.249996	1
GTTAGCG	45	1.927765E-8	40.0	1
CCGTCTA	40	3.457535E-7	39.375	41
CGAACGG	120	0.0	39.374996	2
ATCGAAT	115	0.0	39.130436	43
CGGCGAA	110	0.0	38.863636	31
AGTACGG	110	0.0	38.863636	2
CTACGAA	175	0.0	38.571426	11
CGTAAGA	35	6.2473664E-6	38.571426	30
TACGGCT	830	0.0	38.22289	7