SRR2935997.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935997.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	712173
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8797	1.2352335738647773	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1023	0.143644872804782	No Hit

Adapter graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAAGTCG	20	7.031478E-4	45.0	15
TTTCGCA	40	6.8084773E-9	45.0	14
TTCGTAG	20	7.031478E-4	45.0	1
ATATCGA	20	7.031478E-4	45.0	39
GTTCGTC	20	7.031478E-4	45.0	39
CCAACGG	20	7.031478E-4	45.0	2
TTCGCGG	40	6.8084773E-9	45.0	2
CTTACGG	35	1.211065E-7	45.0	2
TTTCGCG	25	3.889307E-5	44.999996	1
CGTTATT	640	0.0	43.59375	1
CGTTTTT	5020	0.0	43.476093	1
CATACGG	60	3.6379788E-12	41.250004	2
ATAACGG	50	1.0804797E-9	40.499996	2
TCGCAAC	45	1.9264917E-8	40.000004	16
TAGACGG	110	0.0	38.863636	2
TTAACGG	35	6.2449417E-6	38.571426	2
TTCGATG	35	6.2449417E-6	38.571426	1
TAACGGG	225	0.0	38.0	3
CGTAAGG	90	0.0	37.500004	2
CCGAATT	30	1.1394857E-4	37.500004	10