SRR2935996.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935996.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	813392
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9463	1.163399689202746	No Hit
GAATCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTC	5607	0.6893355233393001	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCG	3959	0.4867271868914373	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGC	3616	0.44455809744870856	No Hit
GAACTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCT	1592	0.19572358715109076	No Hit
GCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGC	1530	0.18810118614395027	Illumina Single End Adapter 2 (95% over 21bp)
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1076	0.13228554005940554	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTT	1018	0.12515490685917738	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCT	841	0.10339418140330862	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCGATC	20	7.032068E-4	45.000004	9
GGACGTA	20	7.032068E-4	45.000004	8
TCGACGA	20	7.032068E-4	45.000004	30
CTAACCG	25	3.8897968E-5	45.0	2
GTTCACG	25	3.8897968E-5	45.0	1
GCGTCCA	30	2.1647174E-6	44.999996	28
TAGTACG	30	2.1647174E-6	44.999996	1
CGTTATT	685	0.0	44.014595	1
CTCGAAT	140	0.0	43.392857	43
CGCTCGA	130	0.0	43.26923	41
CGTTTTT	5545	0.0	43.214607	1
AGTACGG	155	0.0	42.09677	2
CCGCTCG	135	0.0	41.666668	40
GAGTACG	60	3.6379788E-12	41.249996	1
GCTAACG	55	6.002665E-11	40.909092	1
TAATACG	200	0.0	40.5	4
GCTCGAA	145	0.0	40.344826	42
CCGATGA	960	0.0	40.07812	18
TTTGGCG	90	0.0	40.0	1
ACCGCTC	170	0.0	39.705883	39