##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935996.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 813392 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.11702106733285 33.0 31.0 34.0 30.0 34.0 2 32.249617650530126 34.0 31.0 34.0 30.0 34.0 3 32.13939404370832 33.0 31.0 34.0 30.0 34.0 4 35.80502758817397 37.0 35.0 37.0 35.0 37.0 5 32.012938410999865 37.0 35.0 37.0 0.0 37.0 6 33.846665568385234 37.0 35.0 37.0 17.0 37.0 7 35.533448816806654 37.0 35.0 37.0 32.0 37.0 8 35.782534128685796 37.0 35.0 37.0 35.0 37.0 9 37.76507637154042 39.0 38.0 39.0 35.0 39.0 10 37.437073391427504 39.0 37.0 39.0 34.0 39.0 11 37.34867443987647 39.0 37.0 39.0 34.0 39.0 12 37.39218974369062 39.0 37.0 39.0 35.0 39.0 13 37.36917009264906 39.0 37.0 39.0 34.0 39.0 14 38.69475726341051 40.0 38.0 41.0 35.0 41.0 15 38.7839713201015 40.0 38.0 41.0 35.0 41.0 16 38.74099941971399 40.0 38.0 41.0 35.0 41.0 17 38.67797322816059 40.0 38.0 41.0 35.0 41.0 18 38.51593450636348 40.0 38.0 41.0 35.0 41.0 19 38.31247418219014 40.0 37.0 41.0 34.0 41.0 20 38.197637793339496 40.0 37.0 41.0 34.0 41.0 21 38.17897274622814 40.0 37.0 41.0 34.0 41.0 22 38.22862408285304 40.0 37.0 41.0 34.0 41.0 23 38.18877982571749 40.0 37.0 41.0 34.0 41.0 24 38.17562011920452 40.0 36.0 41.0 34.0 41.0 25 37.952564077345244 40.0 36.0 41.0 34.0 41.0 26 37.95360539567638 40.0 36.0 41.0 34.0 41.0 27 37.90435607923363 40.0 36.0 41.0 34.0 41.0 28 37.818004111178865 40.0 36.0 41.0 33.0 41.0 29 37.76928221570903 40.0 36.0 41.0 33.0 41.0 30 37.591189733855266 40.0 36.0 41.0 33.0 41.0 31 37.49401518578988 40.0 36.0 41.0 33.0 41.0 32 37.22239338473946 40.0 36.0 41.0 32.0 41.0 33 36.94091040974094 40.0 35.0 41.0 31.0 41.0 34 36.651437437299606 40.0 35.0 41.0 30.0 41.0 35 36.52167343667014 40.0 35.0 41.0 30.0 41.0 36 36.39367734130653 40.0 35.0 41.0 29.0 41.0 37 36.295306568050826 40.0 35.0 41.0 29.0 41.0 38 36.166842063851135 40.0 35.0 41.0 27.0 41.0 39 36.055697621810886 40.0 35.0 41.0 26.0 41.0 40 35.96053194523674 40.0 35.0 41.0 26.0 41.0 41 35.863619263528534 39.0 35.0 41.0 25.0 41.0 42 35.816399718708816 40.0 35.0 41.0 25.0 41.0 43 35.75085936424258 39.0 35.0 41.0 25.0 41.0 44 35.741049825914196 39.0 35.0 41.0 24.0 41.0 45 35.71491359639633 39.0 35.0 41.0 25.0 41.0 46 35.56023540924917 39.0 35.0 41.0 24.0 41.0 47 35.41620891279973 39.0 35.0 41.0 23.0 41.0 48 35.368929126423666 39.0 35.0 41.0 23.0 41.0 49 35.34837692035329 39.0 35.0 41.0 24.0 41.0 50 35.243759466530285 39.0 35.0 41.0 24.0 41.0 51 34.28022404941283 38.0 34.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 12.0 9 16.0 10 31.0 11 19.0 12 9.0 13 15.0 14 18.0 15 35.0 16 38.0 17 130.0 18 277.0 19 569.0 20 1204.0 21 2247.0 22 3418.0 23 4585.0 24 6639.0 25 9713.0 26 12841.0 27 13529.0 28 12663.0 29 12059.0 30 12331.0 31 14504.0 32 17684.0 33 24268.0 34 38465.0 35 52356.0 36 55369.0 37 86703.0 38 150318.0 39 281091.0 40 233.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.742736589491905 18.15496095363613 22.00648641737317 17.09581603949879 2 34.71364360603497 25.896738595904555 23.515721816786986 15.873895981273481 3 28.794849223990397 25.79592619548754 30.55033735271554 14.85888722780652 4 25.537010445148216 23.797135944292545 33.220513602297544 17.445340008261702 5 23.339668941912386 35.62181580345024 25.181954088557546 15.856561166079825 6 23.17000904852765 34.589226350886165 28.497329700808464 13.743434899777721 7 75.93706355607137 4.6789247988669675 15.806523791726498 3.5774878533351693 8 77.48834510297617 6.678698585675788 12.531473139642385 3.301483171705647 9 71.6352017231544 7.109856010386135 13.808840018097055 7.446102248362413 10 34.658442669709075 33.925831579361486 19.75652575879773 11.659199992131715 11 25.55594350571434 24.42782815665755 33.49541180636151 16.520816531266597 12 23.08825265062848 22.70307551586443 34.634100163266915 19.57457167024018 13 22.425841414717627 23.7483279894565 36.63252158860673 17.193309007219153 14 18.229217892479888 28.677316718138364 33.80043078859886 19.293034600782892 15 17.520949308574462 26.12786946515333 37.37214037020281 18.9790408560694 16 20.451762495819974 25.970380824989675 34.17921494187304 19.398641737317305 17 20.485325648641737 26.016484056887702 33.519016661093296 19.979173633377265 18 21.55455180282078 24.655885477113127 33.23354544918071 20.55601727088538 19 21.043482109487186 26.49460530715817 31.786641619293032 20.67527096406161 20 24.23788284123768 25.259038692291046 33.00130810236639 17.501770364104885 21 21.992839860731355 27.531497728032733 32.8725878789071 17.603074532328815 22 21.68474732970081 23.48683045813089 33.767728229439186 21.060693982729113 23 21.0461868324252 26.74073509451777 33.31567067293506 18.897407400121956 24 19.896064874009088 26.07107028345496 33.71744497118241 20.31541987135354 25 19.464784507347012 29.339236186242303 31.71176997069064 19.484209335720045 26 20.531551822491494 27.23385526289907 32.29267069260578 19.941922222003658 27 21.639258807561422 27.2970474260873 31.802747014969412 19.26094675138187 28 18.788480830890887 28.165263489190945 33.65646576312528 19.38978991679289 29 20.212763341660605 26.690820662116177 33.11896355017015 19.97745244605307 30 20.16813541318331 28.11387375336861 32.526014516985654 19.19197631646242 31 22.463461651946417 27.137714656647717 29.825717489230286 20.57310620217558 32 22.636563919979544 28.831485925605367 30.345393119184845 18.186557035230248 33 21.729867025985012 27.604402305407476 30.12594173535024 20.53978893325727 34 21.99333162853827 27.366263744910203 30.40710997895234 20.23329464759919 35 22.48362413202982 27.783774612978736 29.365176938056926 20.367424316934514 36 21.68155083895588 29.505822530833843 28.876728563841297 19.935898066368985 37 21.01840195133466 29.3821429273954 29.89382733048764 19.705627790782305 38 21.478573676652832 27.366878454668843 29.452096897928676 21.702450970749652 39 22.683650687491394 27.669807423726812 29.32337667446938 20.32316521431241 40 22.601279579833587 26.26937565159234 31.124107441430453 20.005237327143615 41 20.887960540551173 27.27184432598304 29.849814111768985 21.990381021696795 42 22.322816059169504 27.717140075142122 29.376979365422823 20.583064500265554 43 21.505375022129552 27.765702146074712 28.9739756476582 21.75494718413754 44 21.770437870055275 27.116322757047033 29.574547081849833 21.53869229104786 45 21.360057635186973 26.583738222161024 29.267192202529653 22.789011940122354 46 22.641481598048667 28.2877136731121 28.39946790723292 20.67133682160631 47 20.991354721954483 27.494492200562583 31.192094340736077 20.322058736746857 48 21.542134665696246 26.821507956803114 29.63023978598265 22.00611759151799 49 20.867552176564313 26.4316590278734 30.995756043826344 21.70503275173594 50 20.183749041052774 27.063457717803963 30.77163286582607 21.98116037531719 51 20.368161968644884 26.285112221413538 29.5971684009678 23.74955740897378 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 463.0 1 823.5 2 1184.0 3 9467.0 4 17750.0 5 11917.5 6 6085.0 7 5934.5 8 5784.0 9 5726.0 10 5668.0 11 5538.0 12 5408.0 13 5158.0 14 4908.0 15 4791.0 16 4674.0 17 4622.0 18 4570.0 19 4536.0 20 4502.0 21 4730.0 22 4958.0 23 5215.5 24 5473.0 25 6336.5 26 8482.5 27 9765.0 28 11264.0 29 12763.0 30 15091.0 31 17419.0 32 19705.5 33 21992.0 34 24905.5 35 27819.0 36 29603.5 37 31388.0 38 34141.5 39 36895.0 40 39399.0 41 41903.0 42 46165.5 43 50428.0 44 53074.5 45 55721.0 46 67157.0 47 78593.0 48 70855.0 49 63117.0 50 61792.0 51 60467.0 52 54711.5 53 48956.0 54 45282.0 55 41608.0 56 37090.5 57 32573.0 58 29933.5 59 27294.0 60 25584.5 61 23875.0 62 21776.5 63 19678.0 64 15989.5 65 12301.0 66 9766.0 67 7231.0 68 6001.0 69 4771.0 70 3932.5 71 3094.0 72 2585.0 73 2076.0 74 1710.5 75 1142.0 76 939.0 77 655.0 78 371.0 79 313.0 80 255.0 81 177.5 82 100.0 83 53.5 84 7.0 85 7.0 86 7.0 87 8.5 88 10.0 89 6.5 90 3.0 91 2.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 813392.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.540611294325934 #Duplication Level Percentage of deduplicated Percentage of total 1 73.97951283465386 24.07338570896068 2 8.513247419470323 5.540525502588142 3 3.575007129446923 3.489987521213288 4 2.0279393766195386 2.639615479321362 5 1.4257873363591007 2.3197995750416918 6 1.0623500573210714 2.0741712164273918 7 0.8968589759507763 2.0429037525569 8 0.7723445852719512 2.0106051947689543 9 0.645500717465134 1.8904489143517291 >10 6.939167479596044 45.62991699765379 >50 0.12652005999268395 2.552064292718011 >100 0.029995636263454414 1.6961203480426557 >500 0.002691916074925391 0.5539858920455091 >1k 0.0023073566356503353 1.6006400598947608 >5k 7.691188785501117E-4 1.885829544415139 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9463 1.163399689202746 No Hit GAATCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTC 5607 0.6893355233393001 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCG 3959 0.4867271868914373 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGC 3616 0.44455809744870856 No Hit GAACTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCT 1592 0.19572358715109076 No Hit GCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTTCTGC 1530 0.18810118614395027 Illumina Single End Adapter 2 (95% over 21bp) CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1076 0.13228554005940554 No Hit GAATGCTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCTT 1018 0.12515490685917738 No Hit GAATGACTGTCTCTTATACACATCTGACGCAAGATGGCTCGTATGCCGTCT 841 0.10339418140330862 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.4588390345614417E-4 0.0 0.0 0.06823278320908 0.0 2 2.4588390345614417E-4 0.0 0.0 0.37571060448098825 0.0 3 2.4588390345614417E-4 0.0 0.0 0.5226262367960344 0.0 4 2.4588390345614417E-4 0.0 0.0 0.8775596514349785 0.0 5 2.4588390345614417E-4 0.0 0.0 2.016493892243838 0.0 6 2.4588390345614417E-4 0.0 0.0 2.654562621712532 0.0 7 2.4588390345614417E-4 0.0 0.0 3.148789267659382 0.0 8 2.4588390345614417E-4 0.0 0.0 3.7931280366662077 0.0 9 2.4588390345614417E-4 0.0 0.0 4.087205185199756 0.0 10 2.4588390345614417E-4 0.0 0.0 5.171430257489623 0.0 11 2.4588390345614417E-4 0.0 0.0 5.779132324881484 0.0 12 2.4588390345614417E-4 0.0 0.0 6.776683321203061 0.0 13 2.4588390345614417E-4 0.0 0.0 7.047524440860004 0.0 14 2.4588390345614417E-4 0.0 0.0 7.184727658988532 0.0 15 2.4588390345614417E-4 0.0 0.0 7.401720203788579 0.0 16 3.6882585518421623E-4 0.0 0.0 7.696166178177312 0.0 17 3.6882585518421623E-4 0.0 0.0 8.073843853885949 0.0 18 3.6882585518421623E-4 0.0 0.0 8.460004524263823 0.0 19 3.6882585518421623E-4 0.0 0.0 8.811864390109566 0.0 20 3.6882585518421623E-4 0.0 0.0 9.071886618014439 0.0 21 3.6882585518421623E-4 0.0 0.0 9.374938529024137 0.0 22 3.6882585518421623E-4 0.0 0.0 9.724708381690501 0.0 23 3.6882585518421623E-4 0.0 0.0 10.059602258197769 0.0 24 7.376517103684325E-4 0.0 0.0 10.322698034895843 0.0 25 7.376517103684325E-4 0.0 0.0 10.566000157365698 0.0 26 7.376517103684325E-4 0.0 0.0 10.812498770580483 0.0 27 7.376517103684325E-4 0.0 0.0 11.078422212168302 0.0 28 7.376517103684325E-4 0.0 0.0 11.344960363514764 0.0 29 8.605936620965046E-4 0.0 0.0 11.616416192930346 0.0 30 8.605936620965046E-4 0.0 0.0 11.951555953341071 0.0 31 8.605936620965046E-4 0.0 0.0 12.249444302378189 0.0 32 8.605936620965046E-4 0.0 0.0 12.533071385014852 0.0 33 8.605936620965046E-4 0.0 0.0 12.817313177410155 0.0 34 9.835356138245767E-4 0.0 0.0 13.097989653205342 0.0 35 9.835356138245767E-4 0.0 0.0 13.384690284635207 0.0 36 9.835356138245767E-4 0.0 0.0 13.660572024313 0.0 37 9.835356138245767E-4 0.0 0.0 13.953173869425813 0.0 38 9.835356138245767E-4 0.0 0.0 14.23704683596593 0.0 39 9.835356138245767E-4 0.0 0.0 14.537639907941067 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCCGATC 20 7.032068E-4 45.000004 9 GGACGTA 20 7.032068E-4 45.000004 8 TCGACGA 20 7.032068E-4 45.000004 30 CTAACCG 25 3.8897968E-5 45.0 2 GTTCACG 25 3.8897968E-5 45.0 1 GCGTCCA 30 2.1647174E-6 44.999996 28 TAGTACG 30 2.1647174E-6 44.999996 1 CGTTATT 685 0.0 44.014595 1 CTCGAAT 140 0.0 43.392857 43 CGCTCGA 130 0.0 43.26923 41 CGTTTTT 5545 0.0 43.214607 1 AGTACGG 155 0.0 42.09677 2 CCGCTCG 135 0.0 41.666668 40 GAGTACG 60 3.6379788E-12 41.249996 1 GCTAACG 55 6.002665E-11 40.909092 1 TAATACG 200 0.0 40.5 4 GCTCGAA 145 0.0 40.344826 42 CCGATGA 960 0.0 40.07812 18 TTTGGCG 90 0.0 40.0 1 ACCGCTC 170 0.0 39.705883 39 >>END_MODULE