SRR2935995.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935995.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	827693
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4726	0.5709846525221307	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	2518	0.30421907639668333	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTC	1318	0.1592377850241575	No Hit
GCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	1226	0.14812255268559718	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCG	1120	0.13531587194769074	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGC	1039	0.12552963478004525	No Hit

Adapter graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGACGG	30	2.164763E-6	45.000004	2
TATGCGT	20	7.032141E-4	45.0	35
TGCGAAC	20	7.032141E-4	45.0	13
ACTAACG	20	7.032141E-4	45.0	1
TCGTAAG	40	6.8102963E-9	45.0	1
ACTCCGT	20	7.032141E-4	45.0	35
CGTAAGG	110	0.0	42.954544	2
CTAACGG	85	0.0	42.352943	2
CGTTATT	320	0.0	42.1875	1
CCCTCGT	370	0.0	41.959457	14
GCGTAAG	70	0.0	41.785713	1
CGCACGG	65	0.0	41.53846	2
ACGATAG	50	1.0804797E-9	40.5	1
CGTTTTT	2580	0.0	40.2907	1
TATAGCG	45	1.9272193E-8	40.000004	1
TCGTGTA	385	0.0	39.74026	17
GTAACGG	120	0.0	39.375004	2
TTAGGCG	40	3.456662E-7	39.375	1
CGGTTAC	40	3.456662E-7	39.375	29
AGTAACG	40	3.456662E-7	39.375	1