SRR2935993.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935993.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	908985
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6695	0.7365358064214481	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTC	979	0.1077025473467659	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGGCG	30	2.1649976E-6	45.000004	1
CGTTCGG	20	7.032507E-4	45.0	2
GTATACG	25	3.89016E-5	45.0	1
CCGAACA	20	7.032507E-4	45.0	11
CGCAATA	20	7.032507E-4	45.0	30
TATCGAC	20	7.032507E-4	45.0	14
ATCGCGA	20	7.032507E-4	45.0	4
CGTTATT	445	0.0	42.977528	1
CGTTTTT	3205	0.0	41.911076	1
GCGTATG	65	0.0	41.538464	1
TAAACGG	90	0.0	40.0	2
TTACGGG	335	0.0	39.626865	3
CGTATGG	120	0.0	39.375004	2
ACTTGCG	35	6.246846E-6	38.57143	43
ACGGGCG	100	0.0	38.25	5
CGTAAGG	190	0.0	37.894737	2
CACGGTC	30	1.1397338E-4	37.500004	37
CGCATGG	120	0.0	37.500004	2
CGAATAT	90	0.0	37.5	14
TACGGGA	475	0.0	37.42105	4