SRR2935992.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935992.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	827155
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6306	0.7623722276961392	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTC	2011	0.24312251029129972	No Hit
GCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC	1581	0.19113709038813764	TruSeq Adapter, Index 23 (95% over 22bp)
GAATGATACCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCG	1445	0.1746951901396957	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGC	1284	0.15523088175734898	No Hit
CCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGC	1038	0.12549038571972607	TruSeq Adapter, Index 23 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCCGTCTTCTGCT	902	0.1090484854712841	TruSeq Adapter, Index 20 (95% over 24bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGACCTTATCGTATGCC	886	0.10711414426558503	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCACGG	65	0.0	45.000004	2
TCGATAG	20	7.032138E-4	45.000004	1
GCGTAGC	20	7.032138E-4	45.000004	21
AAGTACG	25	3.8898546E-5	45.0	1
CGTATGG	50	2.1827873E-11	45.0	2
ACGCTAG	25	3.8898546E-5	45.0	1
GTACGAG	25	3.8898546E-5	45.0	1
TATCCGG	35	1.2113742E-7	45.0	2
CGAATAT	90	0.0	42.5	14
CGTTATT	465	0.0	42.096775	1
CGTAAGG	155	0.0	42.09677	2
CGTTTTT	3230	0.0	41.30805	1
CATACGG	50	1.0804797E-9	40.5	2
TATAGCG	50	1.0804797E-9	40.5	1
TACGGGA	490	0.0	39.94898	4
TTGTCGC	40	3.456662E-7	39.375004	38
ACGGGAG	430	0.0	38.720932	5
CTAACGG	70	0.0	38.571426	2
ATAGCGG	135	0.0	38.333332	2
GCTACGA	100	0.0	38.25	10