SRR2935991.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935991.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	626667
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4531	0.7230315303023774	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTC	3934	0.6277656235289236	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCG	3812	0.6082975487778997	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGC	3367	0.5372869482516233	No Hit
GCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	2607	0.41601041701573566	No Hit
CCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	1292	0.206170103101009	No Hit
CTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT	1005	0.1603722551211409	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCT	912	0.14553183748306517	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCT	774	0.12351057260075926	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTT	770	0.1228722750679388	No Hit
TCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	672	0.10723398551383749	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	672	0.10723398551383749	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCTACG	20	7.030827E-4	45.000004	18
CGGGTAC	40	6.8066583E-9	45.000004	6
ATCTCGC	30	2.1639153E-6	45.000004	25
CGCGAGG	40	6.8066583E-9	45.000004	2
CCCGTAG	20	7.030827E-4	45.000004	1
TCTACGT	20	7.030827E-4	45.000004	16
TATAGCG	20	7.030827E-4	45.000004	1
TCGAGTG	20	7.030827E-4	45.000004	1
GACGATT	20	7.030827E-4	45.000004	33
TCGAATG	40	6.8066583E-9	45.000004	44
ACGGTTT	20	7.030827E-4	45.000004	5
GCCTATC	25	3.8887687E-5	45.0	18
GCTACGA	150	0.0	42.0	10
CGATGAA	355	0.0	41.830986	19
CGAAAGG	60	3.6379788E-12	41.250004	2
ACGGGAT	215	0.0	40.813957	5
TAATACG	155	0.0	40.645164	4
CGAATAT	155	0.0	40.645164	14
CATACGA	155	0.0	40.645164	18
ACATACG	155	0.0	40.645164	17