SRR2935989.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935989.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	764681
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	17651	2.308282800278809	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTC	10809	1.4135306094959859	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCG	9826	1.2849802728196464	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGC	7753	1.013886836471679	No Hit
GAACTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCT	3369	0.44057587412267335	No Hit
GCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTGC	2944	0.38499714259933226	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCT	2153	0.2815553152229492	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1938	0.25343901574643546	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTC	1550	0.20269890320277345	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGGACTGGT	1438	0.18805227277779885	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTT	1259	0.16464381879502696	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGGACTGGTCGTA	1255	0.16412072485127785	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTT	1024	0.13391204959976774	No Hit
GAATAATACCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCG	1010	0.13208122079664592	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCC	980	0.1281580162185277	No Hit
GAATATGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTC	877	0.11468834716698859	No Hit
GAATGATACGGCGACCACCGATGAATGATACGGCGAGCACCGGTCGAATGC	869	0.1136421592794904	No Hit
CGCTGTCTCTTATACACATCTGACGCTGGACTGGTCGTATGCCGTCTTCTG	841	0.10998050167324676	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	781	0.10213409251701036	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAACC	115	0.0	45.000004	33
ATTACGG	35	1.2112105E-7	45.000004	2
ACCCGCC	35	1.2112105E-7	45.000004	39
TCACGCC	20	7.031804E-4	45.0	13
GAGTACG	20	7.031804E-4	45.0	1
CCGTGGT	25	3.889577E-5	45.0	33
CGACCCA	25	3.889577E-5	45.0	34
ATATGCG	20	7.031804E-4	45.0	1
CCGTCGA	40	6.8102963E-9	45.0	41
CGCCTTG	20	7.031804E-4	45.0	41
ATATCCG	20	7.031804E-4	45.0	18
CTTTGCG	25	3.889577E-5	45.0	1
AGCGACG	20	7.031804E-4	45.0	1
CGGTCGA	285	0.0	45.0	41
CGATCGC	20	7.031804E-4	45.0	10
TCGACGG	20	7.031804E-4	45.0	2
TCGCGTC	20	7.031804E-4	45.0	1
TCGCGAG	20	7.031804E-4	45.0	1
TATCCGC	20	7.031804E-4	45.0	19
ACCGGTC	335	0.0	44.328354	39

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content