SRR2935988.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935988.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	457631
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4216	0.9212662603713472	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTC	3582	0.7827266946513676	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCG	3218	0.7031866285282247	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGC	2802	0.6122836958160613	No Hit
GCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	2009	0.43899998033350013	No Hit
CCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	1044	0.2281313984411021	No Hit
CTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGCT	825	0.1802762487681123	Illumina Single End Adapter 1 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCT	814	0.17787256545120414	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCT	739	0.16148381556319394	No Hit
TCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	686	0.14990243230900005	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCC	617	0.13482478241203066	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTC	533	0.11646938253745921	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCTATCGTTCGTA	498	0.1088212992563878	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	489	0.10685464926982657	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGCT	20	7.02883E-4	45.000004	34
CAACGTA	20	7.02883E-4	45.000004	26
CGTGAGA	20	7.02883E-4	45.000004	19
CTATACG	20	7.02883E-4	45.000004	11
GACGTAG	35	1.2097917E-7	45.000004	1
ATTACGG	40	6.7993824E-9	45.000004	2
TTCACGA	20	7.02883E-4	45.000004	45
GTAGCGA	20	7.02883E-4	45.000004	28
TACGATC	20	7.02883E-4	45.000004	14
AATAGCG	20	7.02883E-4	45.000004	1
TATACGA	20	7.02883E-4	45.000004	12
GGTTACG	20	7.02883E-4	45.000004	1
AACACGT	20	7.02883E-4	45.000004	41
ACGCGCT	20	7.02883E-4	45.000004	25
ACGCATT	25	3.8871134E-5	45.0	35
TTTCGTC	45	3.8380676E-10	45.0	16
CGATTCG	25	3.8871134E-5	45.0	10
TACGAAT	75	0.0	45.0	12
CGAATAT	75	0.0	45.0	14
GCGATAT	25	3.8871134E-5	45.0	9