SRR2935986.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935986.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	469304
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2194	0.46750080970969776	No Hit
GCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC	927	0.1975265499548267	No Hit
CCTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGC	692	0.1474523975930314	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	655	0.13956838211479128	No Hit
CTGTCTCTTATACACATCTGACGCGGAGTTACTCGTATGCCGTCTTCTGCT	477	0.10163987521947394	TruSeq Adapter, Index 27 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGAGT	20	7.0290145E-4	45.000004	32
TAACGCC	20	7.0290145E-4	45.000004	12
CGAGACC	20	7.0290145E-4	45.000004	21
TAGGCCG	20	7.0290145E-4	45.000004	43
TTTGACG	30	2.1627457E-6	45.000004	1
TAGGACG	30	2.1627457E-6	45.000004	1
TTGACCG	25	3.8872662E-5	45.0	24
TAGGCGT	25	3.8872662E-5	45.0	2
CGTTATT	135	0.0	43.333336	1
TACGAAT	100	0.0	42.75	12
CGTAAGG	90	0.0	42.5	2
ACGCCGG	55	6.002665E-11	40.90909	27
CACGCCG	55	6.002665E-11	40.90909	26
CGAACGG	50	1.0786607E-9	40.5	2
CGGGTAT	85	0.0	39.705883	6
CGTTAGG	40	3.4523873E-7	39.375004	2
CTTACGG	40	3.4523873E-7	39.375004	2
TACCAGG	75	0.0	39.0	2
GCATATC	75	0.0	39.0	28
GCTACGA	110	0.0	38.863632	10