SRR2935985.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935985.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	605478
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4503	0.7437099283541269	No Hit
GCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGC	1636	0.27019974301295835	TruSeq Adapter, Index 19 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGC	1231	0.2033104423282101	TruSeq Adapter, Index 19 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGCT	1047	0.17292122917760844	TruSeq Adapter, Index 13 (95% over 22bp)
GAATCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTC	928	0.15326733588999106	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCG	785	0.1296496321914256	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGC	708	0.1169324071229673	No Hit
TCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGC	670	0.11065637397229956	TruSeq Adapter, Index 19 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCC	625	0.103224229451772	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGATTCG	25	3.8886104E-5	45.000004	10
CGATTAC	25	3.8886104E-5	45.000004	10
CGGAGTA	25	3.8886104E-5	45.000004	25
TACACGG	55	1.8189894E-12	45.000004	2
GCATACG	55	1.8189894E-12	45.000004	1
AAGTACG	20	7.0306385E-4	45.0	1
CAGCGCG	35	1.2106466E-7	45.0	1
CGAACTA	20	7.0306385E-4	45.0	40
CGCGGCC	20	7.0306385E-4	45.0	13
TTCGTCA	20	7.0306385E-4	45.0	39
ATTCGAT	35	1.2106466E-7	45.0	14
TCGGCCC	20	7.0306385E-4	45.0	40
CGCTCAA	20	7.0306385E-4	45.0	26
AACGACC	20	7.0306385E-4	45.0	40
ATGCGTC	20	7.0306385E-4	45.0	39
ATGCGCA	20	7.0306385E-4	45.0	20
GCTAACG	35	1.2106466E-7	45.0	1
TCGCGAG	35	1.2106466E-7	45.0	1
CGTTTTT	2415	0.0	42.577644	1
TACGAAT	80	0.0	42.1875	12