##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935984.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 314615 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.97857063394943 33.0 31.0 34.0 30.0 34.0 2 32.11637080240929 33.0 31.0 34.0 30.0 34.0 3 32.00835942342228 33.0 31.0 34.0 30.0 34.0 4 35.70128569839328 37.0 35.0 37.0 33.0 37.0 5 31.963828806636684 37.0 35.0 37.0 0.0 37.0 6 33.79295647060693 37.0 35.0 37.0 17.0 37.0 7 35.44518538531221 37.0 35.0 37.0 32.0 37.0 8 35.63927339764474 37.0 35.0 37.0 33.0 37.0 9 37.60372836641609 39.0 37.0 39.0 35.0 39.0 10 37.36301511371041 39.0 37.0 39.0 34.0 39.0 11 37.24992451091016 39.0 37.0 39.0 34.0 39.0 12 37.03010981676017 39.0 35.0 39.0 34.0 39.0 13 36.804484846558495 39.0 35.0 39.0 33.0 39.0 14 37.95549798960634 40.0 36.0 41.0 33.0 41.0 15 38.089973459625256 40.0 36.0 41.0 33.0 41.0 16 38.18573494588624 40.0 36.0 41.0 34.0 41.0 17 38.11299206967246 40.0 36.0 41.0 34.0 41.0 18 37.97767430033533 39.0 36.0 41.0 34.0 41.0 19 37.775439823276066 39.0 36.0 41.0 34.0 41.0 20 37.58747040033056 39.0 35.0 41.0 33.0 41.0 21 37.63486801328608 39.0 35.0 41.0 33.0 41.0 22 37.6654228183653 39.0 35.0 41.0 34.0 41.0 23 37.631880234572414 39.0 35.0 41.0 34.0 41.0 24 37.59334424614211 39.0 35.0 41.0 33.0 41.0 25 37.433116666401794 39.0 35.0 41.0 33.0 41.0 26 37.40763472815981 39.0 35.0 41.0 33.0 41.0 27 37.35944249320598 39.0 35.0 41.0 33.0 41.0 28 37.29038348457639 39.0 35.0 41.0 33.0 41.0 29 37.2725458099582 39.0 35.0 41.0 33.0 41.0 30 37.07841012030577 39.0 35.0 41.0 33.0 41.0 31 36.93365224162866 39.0 35.0 41.0 32.0 41.0 32 36.667892503536066 39.0 35.0 41.0 32.0 41.0 33 36.40797800486309 39.0 35.0 41.0 31.0 41.0 34 36.13260016210289 39.0 35.0 41.0 30.0 41.0 35 36.047038443812276 39.0 35.0 41.0 30.0 41.0 36 35.89624143794797 39.0 35.0 41.0 29.0 41.0 37 35.755841266309616 39.0 35.0 41.0 28.0 41.0 38 35.646733308964926 39.0 35.0 41.0 27.0 41.0 39 35.577652050919376 39.0 35.0 41.0 27.0 41.0 40 35.50080574670629 39.0 35.0 41.0 26.0 41.0 41 35.35513564197511 38.0 35.0 41.0 25.0 41.0 42 35.362735406767 38.0 35.0 41.0 25.0 41.0 43 35.288606709788155 38.0 35.0 41.0 25.0 41.0 44 35.22614942072056 38.0 35.0 41.0 24.0 41.0 45 35.23745530251259 38.0 35.0 41.0 24.0 41.0 46 35.133795273588355 38.0 35.0 40.0 24.0 41.0 47 34.97111390111724 38.0 35.0 40.0 23.0 41.0 48 34.976345692354144 38.0 35.0 40.0 23.0 41.0 49 34.99535940752984 38.0 35.0 40.0 24.0 41.0 50 34.879249241135994 38.0 35.0 40.0 24.0 41.0 51 33.89205219077285 36.0 33.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 9.0 10 10.0 11 11.0 12 8.0 13 7.0 14 8.0 15 16.0 16 24.0 17 49.0 18 100.0 19 220.0 20 412.0 21 857.0 22 1301.0 23 1878.0 24 2602.0 25 3697.0 26 4867.0 27 5324.0 28 5303.0 29 5050.0 30 5428.0 31 6656.0 32 8615.0 33 12618.0 34 21476.0 35 32101.0 36 22912.0 37 31852.0 38 52611.0 39 88541.0 40 49.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.35271681261224 17.407943041495162 22.167728811404412 18.071611334488182 2 34.19131319231442 27.55590165758149 22.060931614830825 16.19185353527327 3 28.052699330928277 27.341671566835657 30.11045245776584 14.495176644470225 4 25.350666687856588 21.385185067463407 36.07965290911114 17.18449533556887 5 24.16731560796529 33.38048090523338 25.934554932218745 16.517648554582586 6 22.327288908666148 34.53903977877724 29.569473801312718 13.5641975112439 7 69.25607488517713 5.260397628847957 20.74758037601513 4.735947109959792 8 68.64930152726349 9.43502375919775 16.208699521637556 5.706975191901212 9 64.4591008057467 6.595680434817157 17.1860845795655 11.759134179870635 10 41.923620933521924 21.22053938941246 23.66384310983265 13.191996567232966 11 31.948254215469703 20.512054415714445 30.02463328194778 17.515058086868077 12 27.316243662889562 18.669167077221367 34.502805015654054 19.511784244235017 13 22.85682500834353 23.93751092605248 36.83263671471481 16.37302735088918 14 16.700411614195126 29.74460848974143 34.14363587241549 19.41134402364795 15 14.875641657263639 22.220809560891883 43.171177470877105 19.732371310967373 16 16.783370150819255 20.807335950288447 38.95523099661491 23.454062902277386 17 16.696597428603212 22.340956407037172 35.4595299016258 25.502916262733816 18 18.435548209716636 22.415333026079495 36.658455572684076 22.490663191519793 19 20.52635761168412 23.76428333041972 32.52928182063792 23.18007723725824 20 22.895602561861324 22.96711854170971 34.683343133671315 19.453935762757656 21 20.0546699934841 27.39793080431639 33.806398296330435 18.74100090586908 22 18.529949303116506 22.276115251974634 34.10644756289433 25.087487882014525 23 18.77310363460102 25.911987667466583 33.12397692417717 22.190931773755224 24 19.883667339446625 22.38100535575227 34.15889261478315 23.576434690017958 25 16.676255105446337 27.608982407068954 33.530823387314655 22.18393910017005 26 16.794812707594996 25.122133401141078 35.49640036234763 22.586653528916294 27 21.126773993611238 25.863992498768333 31.719720928754192 21.289512578866233 28 15.583173084563672 25.376412440602003 37.741366431988304 21.29904804284602 29 18.687920156381608 20.729780843252865 39.47936366670375 21.102935333661776 30 20.214230090745833 25.702843157509975 35.004688269790066 19.078238481954134 31 21.467507906488883 26.46059469510354 30.396834225958713 21.675063172448866 32 23.41814598795353 25.49369864755336 31.668547272062682 19.419608092430433 33 22.000222494159527 24.209907347074996 31.0029718862737 22.786898272491776 34 18.87672234318135 25.82457924765189 33.14590849133067 22.152789917836085 35 20.129364461325746 22.72015002463328 31.841457018896115 25.309028495144858 36 21.101663938464473 26.110961015844765 31.475930899671027 21.31144414601974 37 19.891931408229105 25.10369817078016 34.42715700141443 20.577213419576307 38 18.73082974429064 26.452330626321057 30.31673632852852 24.50010330085978 39 19.854743098707946 25.734628037442587 32.514978624668245 21.895650239181222 40 20.699903056116206 23.11841457018896 33.090284951448595 23.09139742224624 41 18.160926847098835 26.13543537339288 27.960841027923017 27.74279675158527 42 19.180267946537832 22.895602561861324 31.64788710010648 26.276242391494364 43 22.598731783290688 23.055162659123056 28.98526770815123 25.360837849435026 44 20.254914737059583 23.804014430335492 31.616102220173865 24.324968612431068 45 19.22540247604215 24.387266977098996 30.13619821051126 26.2511323363476 46 22.839661173179916 26.23619344277927 29.66006070912067 21.26408467492014 47 17.86246682453157 23.85200959903374 35.169016099041684 23.116507477393004 48 20.37410803680689 23.236336474738966 30.674951925369104 25.714603563085042 49 19.02706482526262 20.430367274287622 36.290386663064375 24.252181237385376 50 19.425965068416954 22.187753285761964 32.74796179457432 25.63831985124676 51 18.542345406290227 23.49856173418305 29.34888673458036 28.610206124946362 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 396.0 1 500.5 2 605.0 3 4357.0 4 8109.0 5 5226.5 6 2344.0 7 2322.5 8 2301.0 9 2263.0 10 2225.0 11 2256.5 12 2288.0 13 2171.0 14 2054.0 15 1947.0 16 1840.0 17 1760.5 18 1681.0 19 1698.5 20 1716.0 21 1656.5 22 1597.0 23 1609.5 24 1622.0 25 1749.5 26 2098.0 27 2319.0 28 2687.0 29 3055.0 30 3209.0 31 3363.0 32 4150.5 33 4938.0 34 6122.0 35 7306.0 36 7452.0 37 7598.0 38 8571.5 39 9545.0 40 11596.5 41 13648.0 42 17772.5 43 21897.0 44 32108.0 45 42319.0 46 37435.5 47 32552.0 48 31608.0 49 30664.0 50 25613.5 51 20563.0 52 18210.0 53 15857.0 54 14793.0 55 13729.0 56 12976.0 57 12223.0 58 11014.0 59 9805.0 60 9355.0 61 8905.0 62 8267.0 63 7629.0 64 6786.5 65 5944.0 66 4885.0 67 3826.0 68 3151.0 69 2476.0 70 1991.5 71 1507.0 72 1166.5 73 826.0 74 758.0 75 472.5 76 255.0 77 258.0 78 261.0 79 215.0 80 169.0 81 100.0 82 31.0 83 40.5 84 50.0 85 28.5 86 7.0 87 4.5 88 2.0 89 1.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 314615.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.60932846424071 #Duplication Level Percentage of deduplicated Percentage of total 1 73.36662524227924 23.924363808383372 2 10.883742748685822 7.09823084424388 3 4.187176702356651 4.096230612748929 4 2.1962837735771763 2.8647735589304086 5 1.346879665324967 2.1960420704194226 6 0.9072414194319904 1.7750720065573051 7 0.6674416760243217 1.5235377390940308 8 0.5075753899886504 1.324135409000398 9 0.3956690036979087 1.161225045423358 >10 5.289575012709462 39.813337026796106 >50 0.19883366594777968 4.0479966219338 >100 0.03896740186916285 2.2673863886057077 >500 0.007993313203930843 1.6792799894918546 >1k 0.005994984902948131 6.228388878371419 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4610 1.4652829648936 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCG 4299 1.3664319883031641 No Hit GAATCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTC 3748 1.1912972998744498 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGC 3423 1.0879964400934476 No Hit GCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGC 1951 0.6201230074853392 Illumina PCR Primer Index 2 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGC 1085 0.3448659472688842 RNA PCR Primer, Index 10 (95% over 23bp) GAATGACTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCT 863 0.27430351381847656 No Hit CTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGCT 794 0.2523719466649715 TruSeq Adapter, Index 10 (95% over 24bp) GAACTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCT 652 0.20723741716065666 TruSeq Adapter, Index 10 (95% over 21bp) GAATGATCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTC 642 0.20405892916739507 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGATTACCTCGTA 582 0.18498800120782544 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGATTACCT 575 0.1827630596125423 No Hit TCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGC 543 0.17259189803410518 Illumina PCR Primer Index 2 (95% over 22bp) CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 503 0.15987794606105873 No Hit GAATAATACCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCG 481 0.1528852724758832 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCC 385 0.1223717877405718 No Hit GAATAATACGGCTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGC 342 0.1087042893695469 No Hit GAATATGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTC 324 0.102983010981676 No Hit ACTGTCTCTTATACACATCTGACGCTGATTACCTCGTATGCCGTCTTCTGC 324 0.102983010981676 TruSeq Adapter, Index 10 (95% over 23bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.1784879932616057E-4 0.0 0.0 0.26158956184543014 0.0 2 3.1784879932616057E-4 0.0 0.0 1.5539627799055988 0.0 3 3.1784879932616057E-4 0.0 0.0 1.9417383150835148 0.0 4 3.1784879932616057E-4 0.0 0.0 2.604135212879233 0.0 5 3.1784879932616057E-4 0.0 0.0 5.106876658773421 0.0 6 3.1784879932616057E-4 0.0 0.0 5.980007310522384 0.0 7 3.1784879932616057E-4 0.0 0.0 7.122673744099932 0.0 8 3.1784879932616057E-4 0.0 0.0 8.520254914737059 0.0 9 3.1784879932616057E-4 0.0 0.0 8.980182127362013 0.0 10 3.1784879932616057E-4 0.0 0.0 11.533143683549735 0.0 11 3.1784879932616057E-4 0.0 0.0 13.182461103253182 0.0 12 3.1784879932616057E-4 0.0 0.0 15.61908999888753 0.0 13 3.1784879932616057E-4 0.0 0.0 16.188675047280007 0.0 14 3.1784879932616057E-4 0.0 0.0 16.425790251577325 0.0 15 3.1784879932616057E-4 0.0 0.0 16.965815361632473 0.0 16 3.1784879932616057E-4 0.0 0.0 17.768383579931026 0.0 17 3.1784879932616057E-4 0.0 0.0 18.683788121990368 0.0 18 3.1784879932616057E-4 0.0 0.0 19.636380973570873 0.0 19 3.1784879932616057E-4 0.0 0.0 20.435135006277513 0.0 20 3.1784879932616057E-4 0.0 0.0 21.007898542663256 0.0 21 3.1784879932616057E-4 0.0 0.0 21.666799103666385 0.0 22 6.356975986523211E-4 0.0 0.0 22.40738680609634 0.0 23 6.356975986523211E-4 0.0 0.0 23.042766555949335 0.0 24 6.356975986523211E-4 0.0 0.0 23.57865963161324 0.0 25 6.356975986523211E-4 0.0 0.0 24.011887545094798 0.0 26 6.356975986523211E-4 0.0 0.0 24.468318420927165 0.0 27 6.356975986523211E-4 0.0 0.0 24.928881331150773 0.0 28 6.356975986523211E-4 0.0 0.0 25.315385471131382 0.0 29 6.356975986523211E-4 0.0 0.0 25.768002161371836 0.0 30 6.356975986523211E-4 0.0 0.0 26.286095704273478 0.0 31 6.356975986523211E-4 0.0 0.0 26.767000937653957 0.0 32 6.356975986523211E-4 0.0 0.0 27.22565675508161 0.0 33 6.356975986523211E-4 0.0 0.0 27.64998490218203 0.0 34 6.356975986523211E-4 0.0 0.0 28.07749153727572 0.0 35 6.356975986523211E-4 0.0 0.0 28.591135196986794 0.0 36 6.356975986523211E-4 0.0 0.0 29.03167363285285 0.0 37 6.356975986523211E-4 0.0 0.0 29.44138073518427 0.0 38 6.356975986523211E-4 0.0 0.0 29.893997425424725 0.0 39 9.535463979784817E-4 0.0 0.0 30.327543187705608 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCCTCGA 60 0.0 45.000004 41 ACGCATG 30 2.1604574E-6 45.000004 1 CACGAGG 30 2.1604574E-6 45.000004 2 TACGAAT 55 1.8189894E-12 45.000004 12 AGACCGG 30 2.1604574E-6 45.000004 11 GTCGTCA 30 2.1604574E-6 45.000004 9 CGAATAT 55 1.8189894E-12 45.000004 14 GGGCCGA 60 0.0 45.000004 7 TAGATCC 30 2.1604574E-6 45.000004 36 GGGTTCG 30 2.1604574E-6 45.000004 7 CGGAATA 25 3.8843267E-5 45.0 6 CCCCTCG 70 0.0 45.0 40 GAATGCG 20 7.0254673E-4 45.0 1 ACGCATT 20 7.0254673E-4 45.0 25 CTATCAT 20 7.0254673E-4 45.0 13 GTGGGCG 20 7.0254673E-4 45.0 5 CGGCAGG 35 1.2081728E-7 45.0 2 TTCACTC 20 7.0254673E-4 45.0 20 CCGGATA 20 7.0254673E-4 45.0 19 GGCCGAT 50 2.1827873E-11 45.0 8 >>END_MODULE