SRR2935983.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935983.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1271727
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20163	1.5854817897237379	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTC	11541	0.9075060921093914	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCG	7610	0.5983988701977704	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGC	6526	0.5131604503167739	No Hit
GAACTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCT	3367	0.2647580809403276	No Hit
GCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTTCTGC	2569	0.20200876445966784	TruSeq Adapter, Index 13 (95% over 21bp)
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2309	0.1815641250048163	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCT	1553	0.12211740412840176	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTCTT	1502	0.11810710946610398	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTCATGCACTCGTATGCCGTC	1295	0.10183003113089523	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1288	0.1012795985301877	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCGTAA	90	0.0	45.000004	41
CGTTTTT	8460	0.0	43.164894	1
CGTTATT	1015	0.0	42.78325	1
TAATACG	395	0.0	42.151897	4
ACGTAAG	75	0.0	42.000004	1
CGATGAA	1675	0.0	41.10448	19
CCGATGA	1680	0.0	40.3125	18
TAGCCGT	45	1.9284926E-8	40.000004	44
TACGGGA	390	0.0	39.807693	4
CCGTAAG	85	0.0	39.705883	42
CTCGAAT	205	0.0	39.51219	43
GATGAAT	1865	0.0	38.967827	20
ACGGGTA	145	0.0	38.793106	5
CGTAAGG	175	0.0	38.571426	2
TACGGCT	830	0.0	37.68072	7
TATTGCG	90	0.0	37.500004	1
AAGGGCG	450	0.0	37.5	5
ATATGCG	60	1.5643309E-10	37.499996	1
TCGTCTA	30	1.1399903E-4	37.499996	19
ATGAATG	1920	0.0	37.499996	21