SRR2935981.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935981.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1023267
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22085	2.1582832242220262	No Hit
GAATCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTC	7308	0.714183101771092	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCG	5492	0.536712314576743	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGC	4718	0.46107223236945977	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2461	0.2405041890337517	No Hit
GAACTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCT	2387	0.23327244990799076	No Hit
GCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	2202	0.21519310209358847	TruSeq Adapter, Index 15 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTG	1620	0.15831645113152287	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTT	1616	0.15792554631391414	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCC	1325	0.12948722083288136	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCT	1302	0.1272395181316313	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTC	1245	0.1216691244807074	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCT	1185	0.1158055522165769	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATACG	20	7.032922E-4	45.000004	1
CTACGTC	20	7.032922E-4	45.000004	12
CGGTCGA	20	7.032922E-4	45.000004	41
CGTCGAA	75	0.0	45.0	42
GCGTACG	65	0.0	44.999996	1
CGTTTTT	12600	0.0	44.0	1
CGTTATT	1555	0.0	43.84244	1
GGCCGAT	110	0.0	42.954544	8
CCGTCGA	80	0.0	42.187504	41
CGAATAT	80	0.0	42.187504	14
TCGAATG	125	0.0	41.399998	44
ATGATCG	60	3.6379788E-12	41.250004	27
GTCGAAT	120	0.0	41.250004	43
TAATACG	200	0.0	40.5	4
CCGATGA	905	0.0	40.276245	18
CGATGAA	925	0.0	40.135136	19
TACGGCT	600	0.0	40.125	7
GCCGATT	40	3.457717E-7	39.375004	9
TACGAAT	80	0.0	39.375004	12
GCTACGA	80	0.0	39.375004	10