##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935981.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1023267 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.04097952929197 33.0 31.0 34.0 30.0 34.0 2 32.20520939305186 33.0 31.0 34.0 30.0 34.0 3 32.00540425910344 33.0 31.0 34.0 30.0 34.0 4 35.73365602526027 37.0 35.0 37.0 33.0 37.0 5 32.033110615313504 37.0 35.0 37.0 0.0 37.0 6 33.84980361919225 37.0 35.0 37.0 17.0 37.0 7 35.50952292998797 37.0 35.0 37.0 32.0 37.0 8 35.74458572396061 37.0 35.0 37.0 35.0 37.0 9 37.7282732659218 39.0 38.0 39.0 35.0 39.0 10 37.37999466414924 39.0 37.0 39.0 34.0 39.0 11 37.35726550352938 39.0 37.0 39.0 34.0 39.0 12 37.374511246820234 39.0 37.0 39.0 35.0 39.0 13 37.357186345303816 39.0 37.0 39.0 34.0 39.0 14 38.67769702335754 40.0 38.0 41.0 35.0 41.0 15 38.75814034851119 40.0 38.0 41.0 35.0 41.0 16 38.72636369588778 40.0 38.0 41.0 35.0 41.0 17 38.661111909208444 40.0 38.0 41.0 34.0 41.0 18 38.4086646007347 40.0 38.0 41.0 34.0 41.0 19 38.09967877396613 40.0 37.0 41.0 34.0 41.0 20 37.90636656903819 40.0 35.0 41.0 34.0 41.0 21 37.88404883573887 40.0 35.0 41.0 34.0 41.0 22 37.90066326774928 40.0 35.0 41.0 34.0 41.0 23 37.88031862651683 40.0 35.0 41.0 34.0 41.0 24 37.83838431220786 40.0 35.0 41.0 34.0 41.0 25 37.62113505077365 39.0 35.0 41.0 33.0 41.0 26 37.62004442633252 40.0 35.0 41.0 33.0 41.0 27 37.58112691995344 40.0 35.0 41.0 33.0 41.0 28 37.473401370316836 40.0 35.0 41.0 33.0 41.0 29 37.38493863282994 40.0 35.0 41.0 33.0 41.0 30 37.15220758609434 39.0 35.0 41.0 33.0 41.0 31 36.95241222476636 39.0 35.0 41.0 32.0 41.0 32 36.523076577276505 39.0 35.0 41.0 31.0 41.0 33 36.054548812773206 39.0 35.0 41.0 27.0 41.0 34 35.6124960543045 39.0 35.0 41.0 23.0 41.0 35 35.33616739326099 39.0 35.0 41.0 21.0 41.0 36 35.11122219323011 39.0 35.0 41.0 20.0 41.0 37 35.0030656710321 39.0 35.0 41.0 18.0 41.0 38 34.88110141341409 39.0 35.0 41.0 18.0 41.0 39 34.800648315640004 39.0 35.0 41.0 18.0 41.0 40 34.698297707245516 39.0 35.0 41.0 18.0 41.0 41 34.59088194967687 39.0 35.0 41.0 18.0 41.0 42 34.52917176064507 39.0 35.0 41.0 17.0 41.0 43 34.46573670410557 39.0 35.0 41.0 15.0 41.0 44 34.43207198121311 39.0 35.0 41.0 15.0 41.0 45 34.426400929571656 39.0 35.0 41.0 17.0 41.0 46 34.311155348506304 39.0 34.0 41.0 15.0 41.0 47 34.19507127660718 38.0 34.0 41.0 15.0 41.0 48 34.143443500083556 38.0 34.0 41.0 15.0 41.0 49 34.07842039272253 38.0 34.0 41.0 15.0 41.0 50 33.96675647704851 38.0 34.0 40.0 15.0 41.0 51 33.06585573462254 37.0 32.0 40.0 12.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 4.0 8 19.0 9 34.0 10 33.0 11 26.0 12 15.0 13 17.0 14 39.0 15 48.0 16 99.0 17 177.0 18 432.0 19 903.0 20 1877.0 21 3279.0 22 4864.0 23 7240.0 24 11338.0 25 18146.0 26 24714.0 27 25335.0 28 22176.0 29 19493.0 30 18727.0 31 20436.0 32 24103.0 33 32217.0 34 50071.0 35 69022.0 36 70362.0 37 104587.0 38 179308.0 39 313886.0 40 240.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.884898076455116 16.985498408528763 20.513414387447266 22.616189127568855 2 40.07194603168088 24.049637093739953 21.515498887387164 14.362917987192002 3 26.667331204856602 23.849102922306688 35.19658114646519 14.286984726371513 4 24.00585575416778 22.00579125487287 38.242316032863364 15.74603695809598 5 21.624268152886785 33.60423037193616 30.090484692655973 14.68101678252108 6 21.695315103487165 32.42917049020441 32.973603174928925 12.901911231379493 7 69.35355093050005 4.917191700699817 21.885978928275808 3.8432784405243203 8 70.7313926863663 6.557232862977111 19.058564382512092 3.6528100681444826 9 65.71667023367313 6.270699631669936 20.30349850039139 7.709131634265544 10 33.82704611797312 25.50644162276317 27.75082163306351 12.915690626200199 11 25.408031334930183 22.967612558599075 35.024680752921775 16.599675353548974 12 22.512012993676137 20.509896244088786 38.13638082729141 18.841709934943665 13 21.803302559351568 21.30910114368977 40.08777767679403 16.79981862016463 14 18.310470287813445 25.735707298290674 37.49979233181565 18.454030082080237 15 17.499831422297408 24.086088967981965 41.31170066072687 17.102378948993763 16 19.888357584090958 23.47520246426397 38.0098253925906 18.62661455905448 17 19.893243894311063 24.126254437991257 37.2685721322001 18.71192953549758 18 20.065535192672098 23.90871590699202 36.86721061072037 19.158538289615514 19 20.271248852938676 25.372947627549795 35.19110847901867 19.16469504049285 20 22.047227165539397 24.259748433204628 36.727266686016456 16.965757715239523 21 20.83268589722917 25.99047951316714 36.14012764996819 17.0367069396355 22 19.601433447966173 23.02996187700766 37.276487954756675 20.09211672026949 23 19.895100692194706 24.904350477441373 36.641951709573355 18.558597120790566 24 19.55687029875878 23.88682523720593 36.85587437100972 19.700430093025574 25 18.843664459031707 27.387768783709433 34.756324595633394 19.012242161625462 26 19.041950927763722 25.412331287923873 36.49018291413678 19.055534870175624 27 21.144432489272106 25.018983315205123 35.06963480694677 18.766949388576002 28 18.70049556958252 25.721536998652354 37.23163162693608 18.346335804829042 29 20.711700856179277 23.898356929325388 36.34799128673162 19.041950927763722 30 19.796494951952912 26.551623378844425 35.46904180433846 18.182839864864206 31 20.469926226488298 25.628990283083496 34.44897568278856 19.45210780763965 32 21.702155937795318 26.79632979466747 33.987805724214695 17.513708543322515 33 20.93656885250868 27.488719952856876 32.498360642921156 19.076350551713286 34 21.989373252533305 26.13501656947796 32.80903224671567 19.06657793127307 35 21.428033934447217 26.93461237389655 32.342096442082074 19.295257249574156 36 21.82871137249613 28.335224335388514 31.708048827920766 18.128015464194586 37 21.49771271818597 28.68010011072379 32.2171046266517 17.60508254443855 38 20.50784399379634 27.426956991674707 32.05419504391327 20.011003970615686 39 22.789555414178313 27.525562731916498 30.633353758110054 19.051528095795135 40 21.528594198777053 26.413438525819753 33.03302070720545 19.02494656819774 41 21.120685021602377 26.76339606378394 31.712251054710062 20.403667859903624 42 21.17013448102988 25.840176610796593 32.96021468492583 20.029474223247696 43 22.21648895156396 26.438260981737905 31.30101918658571 20.044230880112423 44 20.914971361335798 26.83757025292519 31.1792523359006 21.06820604983841 45 20.268610245419815 26.03445630514812 30.987611249067935 22.709322200364127 46 21.84483619622249 27.727367344006986 30.188113170853747 20.239683288916773 47 20.460739963274495 26.350307397775946 33.12566514897871 20.06328748997085 48 20.476180703570034 25.251083050660288 32.45086570758169 21.82187053818798 49 20.23997646752998 25.130488914428007 33.690327158014476 20.93920746002754 50 20.048237654492915 25.113875459679637 33.008589156104904 21.829297729722548 51 20.01530392360938 25.133225248151263 31.309423640164297 23.542047188075056 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 561.0 1 1000.0 2 1439.0 3 20318.0 4 39197.0 5 26131.0 6 13065.0 7 12612.5 8 12160.0 9 12071.5 10 11983.0 11 11705.0 12 11427.0 13 11102.0 14 10777.0 15 10343.0 16 9909.0 17 9313.0 18 8717.0 19 8356.5 20 7996.0 21 7714.5 22 7433.0 23 7546.5 24 7660.0 25 8273.0 26 10254.5 27 11623.0 28 12851.5 29 14080.0 30 16132.5 31 18185.0 32 19950.5 33 21716.0 34 25392.0 35 29068.0 36 31527.0 37 33986.0 38 36335.5 39 38685.0 40 43074.5 41 47464.0 42 54315.0 43 61166.0 44 79015.5 45 96865.0 46 88842.5 47 80820.0 48 80362.0 49 79904.0 50 72658.0 51 65412.0 52 60218.5 53 55025.0 54 50578.0 55 46131.0 56 43148.0 57 40165.0 58 37820.0 59 35475.0 60 32714.0 61 29953.0 62 27022.5 63 24092.0 64 19758.5 65 15425.0 66 12603.0 67 9781.0 68 7879.5 69 5978.0 70 5294.5 71 4611.0 72 3681.5 73 2752.0 74 2144.5 75 1248.0 76 959.0 77 736.0 78 513.0 79 414.5 80 316.0 81 260.5 82 205.0 83 149.5 84 94.0 85 75.0 86 56.0 87 30.5 88 5.0 89 4.5 90 4.0 91 3.0 92 2.0 93 2.0 94 2.0 95 1.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1023267.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.81686692336423 #Duplication Level Percentage of deduplicated Percentage of total 1 76.0735200591373 28.00788664409137 2 8.81916465169106 6.493880227130952 3 3.593997324997794 3.969591637121124 4 2.0232304432689365 2.9795602394052665 5 1.3018403290909177 2.3964841075804504 6 0.9286359978515063 2.0513680771886675 7 0.726086138240846 1.8712551708558869 8 0.6100427400212775 1.7967889901542282 9 0.515308265570099 1.707483225420357 >10 5.2940433225923975 39.01581690044871 >50 0.08566498739870672 1.9994985627969863 >100 0.02101676141388967 1.297095371103684 >500 0.003990524317113417 1.031564482688364 >1k 0.002660349544742278 1.964889393012844 >5k 5.320699089484556E-4 1.253705410027636 >10k+ 2.660349544742278E-4 2.163131560973464 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 22085 2.1582832242220262 No Hit GAATCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTC 7308 0.714183101771092 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCG 5492 0.536712314576743 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGC 4718 0.46107223236945977 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2461 0.2405041890337517 No Hit GAACTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCT 2387 0.23327244990799076 No Hit GCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC 2202 0.21519310209358847 TruSeq Adapter, Index 15 (95% over 22bp) CGCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTG 1620 0.15831645113152287 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTT 1616 0.15792554631391414 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCC 1325 0.12948722083288136 No Hit GAATGACTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCT 1302 0.1272395181316313 No Hit CGTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTC 1245 0.1216691244807074 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCT 1185 0.1158055522165769 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.9545240880434922E-4 0.0 0.0 0.09068991768521803 0.0 2 1.9545240880434922E-4 0.0 0.0 0.4737766389417425 0.0 3 1.9545240880434922E-4 0.0 0.0 0.7646098232426141 0.0 4 1.9545240880434922E-4 0.0 0.0 1.2170821496246824 0.0 5 1.9545240880434922E-4 0.0 0.0 2.5110748221138763 0.0 6 1.9545240880434922E-4 0.0 0.0 3.423739845025785 0.0 7 1.9545240880434922E-4 0.0 0.0 4.163527212350247 0.0 8 1.9545240880434922E-4 0.0 0.0 5.0314336336459595 0.0 9 1.9545240880434922E-4 0.0 0.0 5.466608421848843 0.0 10 1.9545240880434922E-4 0.0 0.0 6.746626247108526 0.0 11 2.931786132065238E-4 0.0 0.0 7.552671981017662 0.0 12 2.931786132065238E-4 0.0 0.0 8.67877103434392 0.0 13 3.9090481760869843E-4 0.0 0.0 9.015046903691802 0.0 14 3.9090481760869843E-4 0.0 0.0 9.192810869499358 0.0 15 3.9090481760869843E-4 0.0 0.0 9.450123965690285 0.0 16 3.9090481760869843E-4 0.0 0.0 9.808485957233058 0.0 17 3.9090481760869843E-4 0.0 0.0 10.250892484561703 0.0 18 3.9090481760869843E-4 0.0 0.0 10.728675897883935 0.0 19 3.9090481760869843E-4 0.0 0.0 11.118017096222198 0.0 20 3.9090481760869843E-4 0.0 0.0 11.435627260529266 0.0 21 3.9090481760869843E-4 0.0 0.0 11.784705262653834 0.0 22 3.9090481760869843E-4 0.0 0.0 12.206687013262423 0.0 23 4.886310220108731E-4 0.0 0.0 12.600914521820796 0.0 24 4.886310220108731E-4 0.0 0.0 12.927906401750471 0.0 25 4.886310220108731E-4 0.0 0.0 13.230662182988409 0.0 26 4.886310220108731E-4 0.0 0.0 13.518270402544008 0.0 27 4.886310220108731E-4 0.0 0.0 13.822296624439174 0.0 28 5.863572264130476E-4 0.0 0.0 14.12368423881548 0.0 29 5.863572264130476E-4 0.0 0.0 14.444421641663418 0.0 30 6.840834308152222E-4 0.0 0.0 14.851842187816084 0.0 31 6.840834308152222E-4 0.0 0.0 15.203754249868314 0.0 32 6.840834308152222E-4 0.0 0.0 15.545307334253915 0.0 33 6.840834308152222E-4 0.0 0.0 15.882365013237015 0.0 34 6.840834308152222E-4 0.0 0.0 16.208672809735877 0.0 35 6.840834308152222E-4 0.0 0.0 16.55853262149566 0.0 36 6.840834308152222E-4 0.0 0.0 16.880833643614032 0.0 37 6.840834308152222E-4 0.0 0.0 17.21466635785186 0.0 38 6.840834308152222E-4 0.0 0.0 17.564526169611646 0.0 39 6.840834308152222E-4 0.0 0.0 17.926699483126104 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATACG 20 7.032922E-4 45.000004 1 CTACGTC 20 7.032922E-4 45.000004 12 CGGTCGA 20 7.032922E-4 45.000004 41 CGTCGAA 75 0.0 45.0 42 GCGTACG 65 0.0 44.999996 1 CGTTTTT 12600 0.0 44.0 1 CGTTATT 1555 0.0 43.84244 1 GGCCGAT 110 0.0 42.954544 8 CCGTCGA 80 0.0 42.187504 41 CGAATAT 80 0.0 42.187504 14 TCGAATG 125 0.0 41.399998 44 ATGATCG 60 3.6379788E-12 41.250004 27 GTCGAAT 120 0.0 41.250004 43 TAATACG 200 0.0 40.5 4 CCGATGA 905 0.0 40.276245 18 CGATGAA 925 0.0 40.135136 19 TACGGCT 600 0.0 40.125 7 GCCGATT 40 3.457717E-7 39.375004 9 TACGAAT 80 0.0 39.375004 12 GCTACGA 80 0.0 39.375004 10 >>END_MODULE