SRR2935979.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935979.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1004853
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	16397	1.6317809669673076	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTC	2391	0.23794525169353128	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCG	1821	0.18122053673522398	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1796	0.17873261064056137	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGC	1414	0.1407170999141168	No Hit
CGCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTTCTG	1096	0.10907067999000848	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTCGCTAGTTCGTATGCCGTCTT	1087	0.10817502659592995	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGATTCG	20	7.0328615E-4	45.000004	10
CCGCGAA	20	7.0328615E-4	45.000004	33
ACGACTA	20	7.0328615E-4	45.000004	19
CGTTTTT	9325	0.0	43.455765	1
CGTTATT	1240	0.0	43.004032	1
TATTGCG	55	6.002665E-11	40.909092	1
TAATACG	100	0.0	40.500004	4
TCAAGCG	240	0.0	40.312504	17
TAGTACG	45	1.9279469E-8	40.000004	1
CCCGATG	45	1.9279469E-8	40.000004	15
CGAATGC	80	0.0	39.375004	45
CGTAAGG	160	0.0	39.375004	2
TACTACG	40	3.4576442E-7	39.375004	1
ACGTAAG	40	3.4576442E-7	39.375004	1
TACGGGA	375	0.0	39.0	4
CGCTCGA	35	6.2475046E-6	38.57143	41
ACTACGG	70	0.0	38.57143	2
GCGAGAC	260	0.0	38.07692	21
CACGTGA	220	0.0	37.84091	43
CGAACGG	60	1.546141E-10	37.500004	2