SRR2935977.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935977.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	413471
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6647	1.6076097235356288	No Hit
GCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC	1686	0.4077674129503641	TruSeq Adapter, Index 13 (95% over 23bp)
GAATGATACCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCG	1152	0.2786168800230246	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGC	1110	0.2684589729388518	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTC	1040	0.25152912779856385	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	776	0.18767942612662072	No Hit
CTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGCT	664	0.16059167390216	TruSeq Adapter, Index 8 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC	641	0.15502901049892254	TruSeq Adapter, Index 13 (95% over 23bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCC	590	0.14269440903956987	No Hit
TCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC	539	0.13035980758021723	TruSeq Adapter, Index 13 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACCGTG	30	2.162118E-6	45.000004	45
TAGCCGT	35	1.2094097E-7	45.000004	44
TACGCGG	35	1.2094097E-7	45.000004	2
TGTTACG	30	2.162118E-6	45.000004	1
AACGAGC	35	1.2094097E-7	45.000004	15
CGTGTAC	35	1.2094097E-7	45.000004	18
ATCTCGC	20	7.0280425E-4	45.0	45
CCCTCGA	20	7.0280425E-4	45.0	41
GATCGGC	20	7.0280425E-4	45.0	24
TTAGCCG	20	7.0280425E-4	45.0	1
CACATCG	25	3.8864586E-5	45.0	17
GGCGTAA	20	7.0280425E-4	45.0	12
CGACCGT	20	7.0280425E-4	45.0	8
CCTCGAA	20	7.0280425E-4	45.0	42
GTTAACG	20	7.0280425E-4	45.0	1
CTACGCG	20	7.0280425E-4	45.0	1
CGAATAT	45	3.8380676E-10	45.0	14
CATCGTG	20	7.0280425E-4	45.0	33
TGTAGCG	20	7.0280425E-4	45.0	1
CAGTCGT	20	7.0280425E-4	45.0	18