##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935977.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 413471 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.977650185865514 33.0 31.0 34.0 30.0 34.0 2 32.10265532528279 33.0 31.0 34.0 30.0 34.0 3 31.98845142706502 33.0 31.0 34.0 30.0 34.0 4 35.68440591964128 37.0 35.0 37.0 33.0 37.0 5 31.8138418413867 37.0 35.0 37.0 0.0 37.0 6 33.726157336306535 37.0 35.0 37.0 17.0 37.0 7 35.468431885186625 37.0 35.0 37.0 32.0 37.0 8 35.74759293880345 37.0 35.0 37.0 35.0 37.0 9 37.733197733335594 39.0 37.0 39.0 35.0 39.0 10 37.35918117594704 39.0 37.0 39.0 34.0 39.0 11 37.303486822534104 39.0 37.0 39.0 34.0 39.0 12 37.211066797913276 39.0 37.0 39.0 34.0 39.0 13 37.08151962289979 39.0 37.0 39.0 33.0 39.0 14 38.291887460063705 40.0 38.0 41.0 33.0 41.0 15 38.465270841244006 40.0 38.0 41.0 34.0 41.0 16 38.42837829013401 40.0 37.0 41.0 34.0 41.0 17 38.4356847275867 40.0 37.0 41.0 34.0 41.0 18 38.26836706806523 40.0 37.0 41.0 34.0 41.0 19 38.04392327394182 40.0 37.0 41.0 34.0 41.0 20 37.99933973603953 40.0 35.0 41.0 34.0 41.0 21 37.89734467471721 40.0 35.0 41.0 34.0 41.0 22 37.958703270604225 40.0 35.0 41.0 34.0 41.0 23 37.95998268318697 40.0 35.0 41.0 34.0 41.0 24 37.892243954231375 40.0 35.0 41.0 34.0 41.0 25 37.658113870138415 39.0 35.0 41.0 33.0 41.0 26 37.705652875292344 40.0 35.0 41.0 34.0 41.0 27 37.66497529451884 40.0 35.0 41.0 34.0 41.0 28 37.60620696493829 40.0 35.0 41.0 33.0 41.0 29 37.56224741275688 40.0 35.0 41.0 33.0 41.0 30 37.31823755474991 39.0 35.0 41.0 33.0 41.0 31 37.2386019817593 39.0 35.0 41.0 33.0 41.0 32 37.024054891395046 39.0 35.0 41.0 33.0 41.0 33 36.72592273702388 39.0 35.0 41.0 31.0 41.0 34 36.518938450338716 39.0 35.0 41.0 31.0 41.0 35 36.42138142699246 39.0 35.0 41.0 30.0 41.0 36 36.26156852596675 39.0 35.0 41.0 30.0 41.0 37 36.19722302168713 39.0 35.0 41.0 30.0 41.0 38 36.05283804668284 39.0 35.0 41.0 29.0 41.0 39 35.989534937154 39.0 35.0 41.0 29.0 41.0 40 35.90581927148458 39.0 35.0 41.0 28.0 41.0 41 35.834711503346064 39.0 35.0 41.0 28.0 41.0 42 35.8156484977181 39.0 35.0 41.0 27.0 41.0 43 35.72684904140798 39.0 35.0 41.0 27.0 41.0 44 35.63498044602886 39.0 35.0 41.0 27.0 41.0 45 35.600999828283 39.0 35.0 41.0 26.0 41.0 46 35.448490946160675 39.0 35.0 41.0 25.0 41.0 47 35.39637846426956 39.0 35.0 41.0 26.0 41.0 48 35.371714098449466 38.0 35.0 41.0 26.0 41.0 49 35.36282351120151 38.0 35.0 41.0 26.0 41.0 50 35.2481431587705 38.0 35.0 40.0 25.0 41.0 51 34.31809244179156 37.0 34.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 3.0 9 11.0 10 9.0 11 6.0 12 9.0 13 5.0 14 6.0 15 9.0 16 16.0 17 62.0 18 131.0 19 235.0 20 417.0 21 722.0 22 1165.0 23 1808.0 24 2680.0 25 4371.0 26 5971.0 27 6919.0 28 6654.0 29 6516.0 30 6923.0 31 8057.0 32 10222.0 33 15052.0 34 25047.0 35 36410.0 36 30225.0 37 45126.0 38 75153.0 39 123446.0 40 82.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.334146772083166 18.191118603239406 23.6418031736204 17.83293145105703 2 35.94157752297017 23.116736119340896 24.311983186245225 16.629703171443705 3 29.71598975502514 23.144549436357085 32.54279018359208 14.596670625025698 4 26.079942728752442 23.988139434204577 32.34567841517301 17.586239421869973 5 21.889564201600596 35.80444577733384 26.689175298872232 15.616814722193334 6 22.723963712086217 32.9113770977892 29.774760503154994 14.589898686969583 7 73.953433251667 5.791216312631358 15.90558950930053 4.349760926401126 8 75.13610386218139 5.851196335414092 14.2406601672185 4.772039635186022 9 69.49266091213168 7.347310935954396 16.62946131651313 6.530566835400791 10 36.78589308560939 27.93110036737764 22.655035056872187 12.627971490140782 11 28.009703219814693 23.77458153050637 31.457345255169045 16.75836999450989 12 25.713290653999916 20.979947807705983 34.64281654577951 18.66394499251459 13 22.58925051575564 24.733052620377247 35.57395802849535 17.103738835371768 14 17.36929554914371 28.76574173279384 33.950869589402885 19.91409312865957 15 16.896469159868527 24.604385797311057 40.94531418164756 17.55383086117285 16 19.35661751368294 23.057723516280465 38.03386452737919 19.551794442657407 17 19.05018731664373 23.644947287717883 33.66330407694856 23.641561318689824 18 19.84395519879266 23.807957510925796 36.327094282307584 20.02099300797396 19 21.03170476284915 25.514969610927974 33.27367578379137 20.179649842431512 20 23.281923036923992 24.426380568407456 34.09162915899785 18.2000672356707 21 20.965678366802024 26.349369121413595 33.69377779820108 18.9911747135833 22 19.353231544654886 23.644947287717883 33.50247054811583 23.499350619511404 23 18.589937383758475 26.340178634051725 33.51383772985288 21.556046252336923 24 19.847583022751294 23.94291256218695 35.326782289447145 20.882722125614613 25 18.09582776059264 26.35807589891431 33.31769338115612 22.22840295933693 26 17.600267007843357 27.301793838020078 33.42749551963741 21.670443634499154 27 19.615160434468198 27.22585138981936 32.94330194862518 20.215686227087268 28 17.966435372734725 25.203702315277248 36.11305266874823 20.71680964323979 29 19.45650360001064 23.509508526595578 34.56905079195397 22.46493708143981 30 19.75398516461856 26.382503246902445 33.30390765011331 20.55960393836569 31 22.191157300028298 25.920560329503157 29.769923404543487 22.118358965925058 32 22.191399154958873 26.92329087166935 29.619731492656076 21.265578480715696 33 20.744864815186556 27.03526970452583 29.57111865161039 22.648746828677222 34 19.693521431974673 25.5374621194715 30.454856567933426 24.314159880620405 35 18.8912886272556 25.38001455966682 30.901078914845296 24.827617898232283 36 21.098214868757424 27.122095624602448 29.25912579116794 22.520563715472186 37 20.929883837076847 26.831627852981228 30.980891041935227 21.257597268006702 38 20.325004655707414 27.859269452996706 29.387067049442408 22.42865884185348 39 20.47084317884447 24.97103787206358 30.570946934609683 23.987172014482272 40 20.730111664421447 24.642115166480842 31.656391863032717 22.971381306065 41 17.355026108239755 25.186530615206387 30.90712528810969 26.551317988444172 42 20.386435808073603 24.4002602359053 30.753547407194215 24.45975654882688 43 22.136256230787648 24.867040251916094 29.261060630612544 23.73564288668371 44 20.785012733662096 26.3958052680841 29.217526743108944 23.60165525514486 45 20.392724036268564 25.963852362076178 28.70745469452513 24.93596890713013 46 21.491470985873253 26.830418578328345 28.963820920935206 22.714289514863196 47 19.612500030231867 24.96233109456286 31.68759114907696 23.737577726128315 48 19.688200623502013 23.76103765439414 31.758938353596744 24.791823368507103 49 20.616197992120366 22.598682858048086 32.33261824892193 24.452500900909616 50 19.639829637386903 23.76152136425529 31.222987827441344 25.37566117091646 51 18.64169433890164 24.617687818492712 29.02283352399564 27.71778431861001 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 359.0 1 531.0 2 703.0 3 5931.5 4 11160.0 5 7192.0 6 3224.0 7 3184.0 8 3144.0 9 3099.0 10 3054.0 11 3008.5 12 2963.0 13 2879.0 14 2795.0 15 2700.5 16 2606.0 17 2375.5 18 2145.0 19 2077.0 20 2009.0 21 2051.5 22 2094.0 23 2160.5 24 2227.0 25 2592.5 26 3802.0 27 4646.0 28 5338.0 29 6030.0 30 6774.5 31 7519.0 32 8219.5 33 8920.0 34 9783.0 35 10646.0 36 11447.5 37 12249.0 38 13046.5 39 13844.0 40 16216.0 41 18588.0 42 20680.0 43 22772.0 44 24929.0 45 27086.0 46 28801.0 47 30516.0 48 34459.5 49 38403.0 50 39212.0 51 40021.0 52 38011.5 53 36002.0 54 29910.5 55 23819.0 56 20931.0 57 18043.0 58 16471.5 59 14900.0 60 13016.0 61 11132.0 62 10150.5 63 9169.0 64 7690.0 65 6211.0 66 5052.5 67 3894.0 68 3243.0 69 2592.0 70 2223.0 71 1854.0 72 1569.0 73 1284.0 74 1047.5 75 652.0 76 493.0 77 371.5 78 250.0 79 179.5 80 109.0 81 117.0 82 125.0 83 106.5 84 88.0 85 50.5 86 13.0 87 6.5 88 0.0 89 0.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 413471.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.81503306382581 #Duplication Level Percentage of deduplicated Percentage of total 1 74.68228143882631 26.747483790135085 2 10.503753920829864 7.523845879376231 3 3.937970314830759 4.231156110900844 4 2.043705260724981 2.9278148594231976 5 1.2690954260342386 2.2726347322283176 6 0.8739451989375983 1.8780225717553138 7 0.6273996204922435 1.5729236706513026 8 0.5053849336948986 1.4480302488193768 9 0.4042864679022245 1.303157989365797 >10 4.878860779914575 39.30352253434606 >50 0.22901344215696917 5.111680851815055 >100 0.03748731940069436 2.0559014390633426 >500 0.0034079381273358503 0.7835957752782391 >1k 0.00272635050186868 1.2176248370990208 >5k 6.8158762546717E-4 1.622604709742821 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6647 1.6076097235356288 No Hit GCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC 1686 0.4077674129503641 TruSeq Adapter, Index 13 (95% over 23bp) GAATGATACCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCG 1152 0.2786168800230246 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGC 1110 0.2684589729388518 No Hit GAATCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTC 1040 0.25152912779856385 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 776 0.18767942612662072 No Hit CTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGCT 664 0.16059167390216 TruSeq Adapter, Index 8 (95% over 24bp) CCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC 641 0.15502901049892254 TruSeq Adapter, Index 13 (95% over 23bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCC 590 0.14269440903956987 No Hit TCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC 539 0.13035980758021723 TruSeq Adapter, Index 13 (95% over 23bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.16808917675000182 0.0 2 0.0 0.0 0.0 0.9809635984143991 0.0 3 0.0 0.0 0.0 1.2992446870518126 0.0 4 0.0 0.0 0.0 1.7362765466018173 0.0 5 0.0 0.0 0.0 3.0582555971277308 0.0 6 0.0 0.0 0.0 3.8529908989989625 0.0 7 0.0 0.0 0.0 4.6931949278183955 0.0 8 0.0 0.0 0.0 6.12908765064539 0.0 9 0.0 0.0 0.0 6.6950281881921585 0.0 10 0.0 0.0 0.0 8.160427212549369 0.0 11 0.0 0.0 0.0 9.742158458513414 0.0 12 0.0 0.0 0.0 11.246012416832135 0.0 13 0.0 0.0 0.0 11.726336308955162 0.0 14 0.0 0.0 0.0 11.925382916818833 0.0 15 0.0 0.0 0.0 12.290583861987903 0.0 16 0.0 0.0 0.0 13.004297762116327 0.0 17 0.0 0.0 0.0 13.882956724897273 0.0 18 0.0 0.0 0.0 14.904310096717786 0.0 19 0.0 0.0 0.0 15.499998790725346 0.0 20 0.0 0.0 0.0 16.0819017536901 0.0 21 0.0 0.0 0.0 16.763690802982556 0.0 22 0.0 0.0 0.0 17.465070101651627 0.0 23 0.0 0.0 0.0 18.224736438589407 0.0 24 0.0 0.0 0.0 18.818248438221787 0.0 25 0.0 0.0 0.0 19.323241533263516 0.0 26 0.0 0.0 0.0 19.803565425386545 0.0 27 0.0 0.0 0.0 20.271312861119643 0.0 28 0.0 0.0 0.0 20.779208215328282 0.0 29 0.0 0.0 0.0 21.29145695828728 0.0 30 0.0 0.0 0.0 21.88448524805851 0.0 31 0.0 0.0 0.0 22.415840530532975 0.0 32 0.0 0.0 0.0 22.90777345932363 0.0 33 0.0 0.0 0.0 23.393418159919317 0.0 34 0.0 0.0 0.0 23.882206974612487 0.0 35 0.0 0.0 0.0 24.41477153173983 0.0 36 0.0 0.0 0.0 24.93355035782437 0.0 37 0.0 0.0 0.0 25.432497079601713 0.0 38 0.0 0.0 0.0 25.913546536516467 0.0 39 0.0 0.0 0.0 26.41346067801611 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACCGTG 30 2.162118E-6 45.000004 45 TAGCCGT 35 1.2094097E-7 45.000004 44 TACGCGG 35 1.2094097E-7 45.000004 2 TGTTACG 30 2.162118E-6 45.000004 1 AACGAGC 35 1.2094097E-7 45.000004 15 CGTGTAC 35 1.2094097E-7 45.000004 18 ATCTCGC 20 7.0280425E-4 45.0 45 CCCTCGA 20 7.0280425E-4 45.0 41 GATCGGC 20 7.0280425E-4 45.0 24 TTAGCCG 20 7.0280425E-4 45.0 1 CACATCG 25 3.8864586E-5 45.0 17 GGCGTAA 20 7.0280425E-4 45.0 12 CGACCGT 20 7.0280425E-4 45.0 8 CCTCGAA 20 7.0280425E-4 45.0 42 GTTAACG 20 7.0280425E-4 45.0 1 CTACGCG 20 7.0280425E-4 45.0 1 CGAATAT 45 3.8380676E-10 45.0 14 CATCGTG 20 7.0280425E-4 45.0 33 TGTAGCG 20 7.0280425E-4 45.0 1 CAGTCGT 20 7.0280425E-4 45.0 18 >>END_MODULE