Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935976.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 521443 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5027 | 0.9640555151761553 | No Hit |
CCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC | 1237 | 0.23722631236779476 | Illumina Single End Adapter 1 (95% over 22bp) |
GCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC | 1201 | 0.23032239381869157 | Illumina Single End Adapter 1 (95% over 22bp) |
GAATGATACCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCG | 843 | 0.1616667593581657 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGC | 820 | 0.1572559225073498 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTC | 755 | 0.14479051401591353 | No Hit |
CTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGCT | 688 | 0.13194155449397152 | Illumina Single End Adapter 1 (95% over 23bp) |
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC | 676 | 0.12964024831093715 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCC | 631 | 0.12101035012455821 | No Hit |
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 552 | 0.1058600844195818 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATCGGGT | 30 | 2.1632113E-6 | 45.000004 | 4 |
CGAACAC | 20 | 7.0297363E-4 | 45.0 | 34 |
CGTTCTA | 20 | 7.0297363E-4 | 45.0 | 18 |
TCGTGCG | 25 | 3.8878643E-5 | 45.0 | 1 |
TTGACGA | 25 | 3.8878643E-5 | 45.0 | 2 |
GCGATAT | 40 | 6.8030204E-9 | 45.0 | 9 |
CATCGTT | 25 | 3.8878643E-5 | 45.0 | 36 |
TAGATCG | 20 | 7.0297363E-4 | 45.0 | 1 |
ACCCGTA | 20 | 7.0297363E-4 | 45.0 | 15 |
ACGTAAG | 20 | 7.0297363E-4 | 45.0 | 1 |
TACCGGC | 20 | 7.0297363E-4 | 45.0 | 12 |
TCTATAC | 25 | 3.8878643E-5 | 45.0 | 14 |
TCAAGCG | 95 | 0.0 | 42.63158 | 17 |
CGTTATT | 370 | 0.0 | 42.56757 | 1 |
CGTTTTT | 2310 | 0.0 | 42.272728 | 1 |
CGGTAGT | 80 | 0.0 | 42.1875 | 12 |
CGTTAGG | 70 | 0.0 | 41.785713 | 2 |
GCGAGAC | 105 | 0.0 | 40.714287 | 21 |
ACACGAC | 100 | 0.0 | 40.5 | 26 |
TTGCACG | 50 | 1.0786607E-9 | 40.5 | 1 |