FastQCFastQC Report
Sat 14 Jan 2017
SRR2935976.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935976.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521443
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT50270.9640555151761553No Hit
CCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC12370.23722631236779476Illumina Single End Adapter 1 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC12010.23032239381869157Illumina Single End Adapter 1 (95% over 22bp)
GAATGATACCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCG8430.1616667593581657No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGC8200.1572559225073498No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTC7550.14479051401591353No Hit
CTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGCT6880.13194155449397152Illumina Single End Adapter 1 (95% over 23bp)
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC6760.12964024831093715No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCC6310.12101035012455821No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5520.1058600844195818No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATCGGGT302.1632113E-645.0000044
CGAACAC207.0297363E-445.034
CGTTCTA207.0297363E-445.018
TCGTGCG253.8878643E-545.01
TTGACGA253.8878643E-545.02
GCGATAT406.8030204E-945.09
CATCGTT253.8878643E-545.036
TAGATCG207.0297363E-445.01
ACCCGTA207.0297363E-445.015
ACGTAAG207.0297363E-445.01
TACCGGC207.0297363E-445.012
TCTATAC253.8878643E-545.014
TCAAGCG950.042.6315817
CGTTATT3700.042.567571
CGTTTTT23100.042.2727281
CGGTAGT800.042.187512
CGTTAGG700.041.7857132
GCGAGAC1050.040.71428721
ACACGAC1000.040.526
TTGCACG501.0786607E-940.51