##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935976.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 521443 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.12410560694074 33.0 31.0 34.0 30.0 34.0 2 32.25105524477268 34.0 31.0 34.0 30.0 34.0 3 32.169717495488484 33.0 31.0 34.0 30.0 34.0 4 35.80418569239591 37.0 35.0 37.0 35.0 37.0 5 32.14757701225254 37.0 35.0 37.0 0.0 37.0 6 33.932999388236105 37.0 35.0 37.0 17.0 37.0 7 35.57941711749894 37.0 35.0 37.0 32.0 37.0 8 35.826030841338365 37.0 35.0 37.0 35.0 37.0 9 37.81162274687742 39.0 38.0 39.0 35.0 39.0 10 37.4496963234716 39.0 37.0 39.0 35.0 39.0 11 37.35353432685835 39.0 37.0 39.0 34.0 39.0 12 37.28298586806228 39.0 37.0 39.0 35.0 39.0 13 37.198644914209225 39.0 37.0 39.0 34.0 39.0 14 38.4475752862729 40.0 38.0 41.0 34.0 41.0 15 38.59934067577856 40.0 38.0 41.0 35.0 41.0 16 38.54513724414749 40.0 38.0 41.0 35.0 41.0 17 38.54328469267015 40.0 38.0 41.0 35.0 41.0 18 38.406199718857096 40.0 38.0 41.0 34.0 41.0 19 38.21856463697854 40.0 37.0 41.0 34.0 41.0 20 38.238181354433756 40.0 36.0 41.0 34.0 41.0 21 38.149947357621066 40.0 36.0 41.0 34.0 41.0 22 38.206998655653635 40.0 36.0 41.0 34.0 41.0 23 38.21669482570482 40.0 36.0 41.0 34.0 41.0 24 38.17785453060066 40.0 36.0 41.0 34.0 41.0 25 37.92312678471089 40.0 35.0 41.0 34.0 41.0 26 37.97186077864695 40.0 36.0 41.0 34.0 41.0 27 37.93635354199788 40.0 35.0 41.0 34.0 41.0 28 37.880882474210985 40.0 36.0 41.0 34.0 41.0 29 37.849791827678196 40.0 36.0 41.0 34.0 41.0 30 37.64951490383417 40.0 35.0 41.0 33.0 41.0 31 37.58033763997216 40.0 35.0 41.0 33.0 41.0 32 37.414058679472156 40.0 35.0 41.0 33.0 41.0 33 37.237057549914375 40.0 35.0 41.0 33.0 41.0 34 37.08781976169975 40.0 35.0 41.0 32.0 41.0 35 36.99419687290845 40.0 35.0 41.0 32.0 41.0 36 36.850493726064016 40.0 35.0 41.0 31.0 41.0 37 36.75579114112185 40.0 35.0 41.0 31.0 41.0 38 36.648391099314786 40.0 35.0 41.0 31.0 41.0 39 36.57596707597954 39.0 35.0 41.0 31.0 41.0 40 36.48676653056997 39.0 35.0 41.0 30.0 41.0 41 36.38427018868793 39.0 35.0 41.0 30.0 41.0 42 36.35709368042144 39.0 35.0 41.0 30.0 41.0 43 36.278891460811636 39.0 35.0 41.0 30.0 41.0 44 36.22823779396789 39.0 35.0 41.0 30.0 41.0 45 36.19508364289098 39.0 35.0 41.0 30.0 41.0 46 36.08896657928096 39.0 35.0 41.0 30.0 41.0 47 36.00480781216739 39.0 35.0 41.0 29.0 41.0 48 35.961019708769705 39.0 35.0 41.0 29.0 41.0 49 35.93203475739438 39.0 35.0 41.0 29.0 41.0 50 35.82746915770276 39.0 35.0 41.0 29.0 41.0 51 34.85456128474253 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 10.0 9 22.0 10 22.0 11 12.0 12 14.0 13 10.0 14 12.0 15 20.0 16 34.0 17 83.0 18 139.0 19 236.0 20 468.0 21 782.0 22 1148.0 23 1807.0 24 2710.0 25 4132.0 26 5809.0 27 6656.0 28 6583.0 29 6831.0 30 7573.0 31 9212.0 32 11997.0 33 17317.0 34 30525.0 35 43208.0 36 37739.0 37 57776.0 38 97410.0 39 171020.0 40 125.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.553343318445165 19.048294828006128 22.64619526966514 16.752166583883568 2 33.54709910766853 23.802218075609417 24.97511712689594 17.67556568982612 3 31.067058144418468 23.65876999020027 29.682438924292782 15.591732941088479 4 27.371543965495746 24.466528460445343 29.53247047136504 18.62945710269387 5 22.538800981123536 36.10634335871802 24.923145962262414 16.43170969789603 6 25.17456366275892 33.67808178458623 26.877913789234874 14.269440763419972 7 77.15186511277359 6.253416001365442 12.25771560841741 4.337003277443556 8 78.61357809003093 6.042846485617795 10.950190145423374 4.393385278927899 9 73.19553623310698 7.4522047472111055 13.168265754838016 6.183993264843904 10 39.437484058660296 27.759314057337043 20.01081613906026 12.7923857449424 11 30.088235914567846 24.298916660114337 28.205192130299956 17.40765529501786 12 27.279108167143868 22.226782217807123 31.366419723728196 19.127689891320816 13 23.04163638211655 24.885557961272852 32.81010580255177 19.26269985405883 14 19.873696645654462 28.19080896665599 31.69397230378009 20.24152208390946 15 19.00629599016575 25.04990957784456 37.121602936466694 18.822191495523 16 21.417681318955285 23.815258810646608 34.58978258409836 20.17727728629975 17 21.88312049447399 23.86339446497508 31.276860558105103 22.97662448244583 18 22.153332195465275 24.64833164890506 32.56655089818062 20.63178525744904 19 23.563074008089092 25.471048609339853 30.429596331717946 20.536281050853113 20 24.6143873827053 25.682193451633257 30.49211514969038 19.211304015971066 21 23.83405281114139 25.924597702912877 30.918240344582248 19.323109141363485 22 21.72663167402765 24.54880015648882 30.87758393534864 22.84698423413489 23 21.071718289439115 26.07725101305416 30.966567774425968 21.884462923080758 24 21.722796163722595 24.697042629779286 32.84596782390405 20.73419338259407 25 20.79345201680721 26.78988882773381 30.526826517951143 21.88983263750784 26 20.701591545001083 27.290806473574293 30.304558695773075 21.703043285651546 27 20.921366285480865 26.401159858316248 31.630302832716133 21.047171023486747 28 19.647017986625574 26.32099769294055 33.30699616257194 20.724988157861933 29 21.763069021925695 23.667783439417157 32.63693251227843 21.93221502637872 30 22.259384055400112 24.826874653605476 32.46433454855085 20.449406742443564 31 24.398448152530573 25.65918038980291 28.80986032989224 21.132511127774272 32 24.318285987154876 26.375845490302872 29.334366364108828 19.971502158433424 33 23.590306131254998 26.34496963234716 29.26340942346527 20.801314812932574 34 22.69145429126482 26.1031407076133 29.50715610335166 21.698248897770224 35 23.14615403792936 25.36077768806945 29.994457687609195 21.49861058639199 36 24.967829657316333 27.815696058821388 28.250067600869126 18.966406682993156 37 22.481843653093435 27.854242937387212 30.186041427346805 19.477871982172548 38 23.480418761015105 26.72852066285289 28.81120275849901 20.97985781763299 39 23.514363027214863 26.79142303185583 29.085249969795356 20.60896397113395 40 23.754849523341957 25.941090397224624 29.907008052653882 20.397052026779534 41 22.02925343709667 26.20574060827358 28.87889951538327 22.886106439246475 42 22.389983181287313 26.535978045539014 28.99645790623328 22.077580866940394 43 22.73786396595601 25.93533713176704 29.63622102511684 21.69057787716011 44 22.206837564220823 25.85920225221165 29.393624998321965 22.540335185245556 45 22.801725212535214 26.042156093762888 28.605427630632686 22.550691063069213 46 23.299766225646906 26.86391417662141 28.831914514146323 21.004405083585358 47 21.80219122703728 26.057498134983113 30.838269954721802 21.302040683257808 48 22.20837176834285 25.203329990046853 30.03530587235805 22.552992369252248 49 21.74159016421737 24.696467303233526 31.834543756460437 21.72739877608866 50 21.204235170478842 25.303436809008844 30.805476341613563 22.686851678898748 51 21.367436133959032 25.146756213047254 28.971335313735153 24.514472339258557 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 364.0 1 760.5 2 1157.0 3 5088.0 4 9019.0 5 5962.0 6 2905.0 7 2723.0 8 2541.0 9 2574.0 10 2607.0 11 2582.0 12 2557.0 13 2507.0 14 2457.0 15 2311.0 16 2165.0 17 2130.0 18 2095.0 19 2066.5 20 2038.0 21 2068.0 22 2098.0 23 2504.0 24 2910.0 25 3276.5 26 4353.5 27 5064.0 28 5944.5 29 6825.0 30 7684.5 31 8544.0 32 9848.5 33 11153.0 34 13364.5 35 15576.0 36 16264.5 37 16953.0 38 18604.0 39 20255.0 40 21842.0 41 23429.0 42 27073.5 43 30718.0 44 32941.5 45 35165.0 46 40108.0 47 45051.0 48 46425.0 49 47799.0 50 46071.5 51 44344.0 52 39431.5 53 34519.0 54 30951.5 55 27384.0 56 25452.5 57 23521.0 58 22073.5 59 20626.0 60 20136.5 61 19647.0 62 17099.5 63 14552.0 64 12766.0 65 10980.0 66 9091.5 67 7203.0 68 5878.5 69 4554.0 70 4030.5 71 3507.0 72 2638.0 73 1769.0 74 1568.0 75 1281.0 76 1195.0 77 895.0 78 595.0 79 426.5 80 258.0 81 213.5 82 169.0 83 137.5 84 106.0 85 75.5 86 45.0 87 25.0 88 5.0 89 5.5 90 6.0 91 3.5 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 521443.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 31.213838950770917 #Duplication Level Percentage of deduplicated Percentage of total 1 73.63871328375402 22.985469369810925 2 9.673903339539134 6.03919321731399 3 3.782138324507325 3.541651696521306 4 2.090439780969632 2.610026026378837 5 1.3085109967610018 2.0421825759105317 6 0.9192919545184727 1.7216778610247416 7 0.6929054609319164 1.5139767625946972 8 0.5609787200507101 1.4008239537977978 9 0.4466477005034633 1.2547430452122539 >10 6.552546782676013 47.18812704196807 >50 0.29365456928326544 5.617031911657165 >100 0.03407384242738312 1.681416066094917 >500 0.004336670854394216 0.9601185472295872 >1k 0.0012390488155412044 0.4714539814996443 >5k 6.195244077706022E-4 0.9721079429855258 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5027 0.9640555151761553 No Hit CCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC 1237 0.23722631236779476 Illumina Single End Adapter 1 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC 1201 0.23032239381869157 Illumina Single End Adapter 1 (95% over 22bp) GAATGATACCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCG 843 0.1616667593581657 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGC 820 0.1572559225073498 No Hit GAATCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTC 755 0.14479051401591353 No Hit CTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGCT 688 0.13194155449397152 Illumina Single End Adapter 1 (95% over 23bp) TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC 676 0.12964024831093715 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCC 631 0.12101035012455821 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 552 0.1058600844195818 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.8355103050573123E-4 0.0 0.0 0.1376948199515575 0.0 2 3.8355103050573123E-4 0.0 0.0 0.7471574074251645 0.0 3 3.8355103050573123E-4 0.0 0.0 1.0010681896199585 0.0 4 3.8355103050573123E-4 0.0 0.0 1.287005482861981 0.0 5 3.8355103050573123E-4 0.0 0.0 2.159967628293025 0.0 6 5.753265457585969E-4 0.0 0.0 2.7136235408280482 0.0 7 5.753265457585969E-4 0.0 0.0 3.3085111891424375 0.0 8 5.753265457585969E-4 0.0 0.0 4.278511745291432 0.0 9 5.753265457585969E-4 0.0 0.0 4.660720347190392 0.0 10 5.753265457585969E-4 0.0 0.0 5.579325065251619 0.0 11 5.753265457585969E-4 0.0 0.0 6.642144970783 0.0 12 5.753265457585969E-4 0.0 0.0 7.666417997748556 0.0 13 5.753265457585969E-4 0.0 0.0 7.996463659498737 0.0 14 7.671020610114625E-4 0.0 0.0 8.138185765270604 0.0 15 7.671020610114625E-4 0.0023013061830343875 0.0 8.385384404431548 0.0 16 7.671020610114625E-4 0.0023013061830343875 0.0 8.845837416553678 0.0 17 7.671020610114625E-4 0.0023013061830343875 0.0 9.42941030946815 0.0 18 7.671020610114625E-4 0.0023013061830343875 0.0 10.060735305680582 0.0 19 7.671020610114625E-4 0.0023013061830343875 0.0 10.484750969904669 0.0 20 0.0013424286067700592 0.0023013061830343875 0.0 10.883644041630628 0.0 21 0.0013424286067700592 0.0023013061830343875 0.0 11.364808809400069 0.0 22 0.0013424286067700592 0.0023013061830343875 0.0 11.864575802149037 0.0 23 0.0013424286067700592 0.0023013061830343875 0.0 12.363192141806486 0.0 24 0.0013424286067700592 0.0023013061830343875 0.0 12.761893438017195 0.0 25 0.0013424286067700592 0.0023013061830343875 0.0 13.125308039421375 0.0 26 0.0013424286067700592 0.0023013061830343875 0.0 13.448066231591948 0.0 27 0.0013424286067700592 0.0023013061830343875 0.0 13.791727954925083 0.0 28 0.0013424286067700592 0.0023013061830343875 0.0 14.133663698620943 0.0 29 0.0013424286067700592 0.0023013061830343875 0.0 14.511269688153835 0.0 30 0.0013424286067700592 0.0023013061830343875 0.0 14.960791495906552 0.0 31 0.001534204122022925 0.0023013061830343875 0.0 15.345876730534306 0.0 32 0.001534204122022925 0.0023013061830343875 0.0 15.696250596901292 0.0 33 0.001534204122022925 0.0023013061830343875 0.0 16.075774341586712 0.0 34 0.001534204122022925 0.0023013061830343875 0.0 16.439572494021398 0.0 35 0.001534204122022925 0.0023013061830343875 0.0 16.839616218838877 0.0 36 0.0017259796372757904 0.0023013061830343875 0.0 17.210893616368423 0.0 37 0.0017259796372757904 0.0023013061830343875 0.0 17.587540728325052 0.0 38 0.0021095306677815216 0.0023013061830343875 0.0 17.993721269630623 0.0 39 0.0021095306677815216 0.0023013061830343875 0.0 18.358478299641572 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCGGGT 30 2.1632113E-6 45.000004 4 CGAACAC 20 7.0297363E-4 45.0 34 CGTTCTA 20 7.0297363E-4 45.0 18 TCGTGCG 25 3.8878643E-5 45.0 1 TTGACGA 25 3.8878643E-5 45.0 2 GCGATAT 40 6.8030204E-9 45.0 9 CATCGTT 25 3.8878643E-5 45.0 36 TAGATCG 20 7.0297363E-4 45.0 1 ACCCGTA 20 7.0297363E-4 45.0 15 ACGTAAG 20 7.0297363E-4 45.0 1 TACCGGC 20 7.0297363E-4 45.0 12 TCTATAC 25 3.8878643E-5 45.0 14 TCAAGCG 95 0.0 42.63158 17 CGTTATT 370 0.0 42.56757 1 CGTTTTT 2310 0.0 42.272728 1 CGGTAGT 80 0.0 42.1875 12 CGTTAGG 70 0.0 41.785713 2 GCGAGAC 105 0.0 40.714287 21 ACACGAC 100 0.0 40.5 26 TTGCACG 50 1.0786607E-9 40.5 1 >>END_MODULE