SRR2935974.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935974.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	737671
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10954	1.4849438299729825	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTC	9352	1.2677738449796725	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCG	6127	0.8305870774369604	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGC	5380	0.7293224215131136	No Hit
GAACTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCT	2671	0.3620855367772354	No Hit
GCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTCTGC	2179	0.29538913689164953	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTT	1932	0.26190537516047124	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCT	1575	0.21350981670690594	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1220	0.16538538183011126	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTC	1215	0.16470757288818458	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTAGGAATT	914	0.1239034745841981	No Hit
GAATATGTCTCTTATACACATCTGACGCCTAGGAATTCGTATGCCGTCTTC	824	0.11170291362951777	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTAGGAATTCGTA	797	0.10804274534311367	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGATTG	25	3.8894417E-5	45.000004	1
TTACGCG	25	3.8894417E-5	45.000004	1
CGACGGT	20	7.031642E-4	45.0	28
TTGCTCG	20	7.031642E-4	45.0	1
CCAATCG	40	6.8084773E-9	45.0	40
AATAGCG	20	7.031642E-4	45.0	1
GTACGTC	20	7.031642E-4	45.0	43
CGTTATT	750	0.0	43.5	1
CGTTTTT	5730	0.0	42.997383	1
CGGCGAA	190	0.0	42.63158	31
CGATGAA	1355	0.0	42.509228	19
CACAACG	75	0.0	42.0	12
TAATACG	270	0.0	41.666668	4
CCGATGA	1375	0.0	41.072727	18
CGACAGG	110	0.0	40.909092	2
CGATGCG	55	6.002665E-11	40.909092	10
CGAACCC	50	1.0804797E-9	40.500004	34
TATTGCG	50	1.0804797E-9	40.500004	1
CAATCGA	45	1.9266736E-8	40.0	41
GATGAAT	1525	0.0	39.540985	20