SRR2935973.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935973.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	406674
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3742	0.9201473416053154	No Hit
GCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	629	0.1546693420282585	No Hit
CTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGCT	525	0.12909603269449238	No Hit
CCTGTCTCTTATACACATCTGACGCGAATCACGTCGTATGCCGTCTTCTGC	491	0.12073552771999192	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	438	0.1077029758479765	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACAACGG	40	6.7957444E-9	45.0	2
CTGTACG	25	3.8863443E-5	45.0	1
TATATCG	20	7.027904E-4	45.0	1
TAACGCG	25	3.8863443E-5	45.0	1
CGTTCGG	20	7.027904E-4	45.0	2
ACGGGAC	80	0.0	45.0	5
ATATCGG	20	7.027904E-4	45.0	2
TGTTACG	25	3.8863443E-5	45.0	1
CGAATGA	20	7.027904E-4	45.0	45
CCGAAAT	20	7.027904E-4	45.0	45
TTCATCG	20	7.027904E-4	45.0	15
AACTATC	25	3.8863443E-5	45.0	17
CACGTAT	20	7.027904E-4	45.0	6
GTGCGAT	20	7.027904E-4	45.0	29
TAGTACG	20	7.027904E-4	45.0	1
TGCAACG	20	7.027904E-4	45.0	1
ACGCGCT	20	7.027904E-4	45.0	11
TTAGACG	30	2.162029E-6	44.999996	1
GATCACG	30	2.162029E-6	44.999996	1
TCGCGCA	30	2.162029E-6	44.999996	34