SRR2935971.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935971.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	508125
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4079	0.8027552275522756	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTC	1282	0.25230012300123	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGC	1282	0.25230012300123	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCG	1262	0.2483640836408364	No Hit
GCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGC	849	0.1670848708487085	Illumina Single End Adapter 1 (95% over 21bp)
GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC	758	0.14917589175891757	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGTA	65	0.0	45.000004	26
GCGACAC	20	7.029567E-4	45.0	35
ATTAGCG	20	7.029567E-4	45.0	1
GCGATAT	45	3.8380676E-10	45.0	9
CATCGTT	40	6.8030204E-9	45.0	36
CCAGTCG	40	6.8030204E-9	45.0	28
CTAGGCG	20	7.029567E-4	45.0	1
AGTAACG	25	3.887723E-5	45.0	1
TACGTAG	20	7.029567E-4	45.0	1
TATAGCG	30	2.1631022E-6	44.999996	1
CGTACAC	75	0.0	42.0	29
CACGCGT	70	0.0	41.785717	25
TACGGGA	135	0.0	41.666668	4
ACGGGTA	60	3.6379788E-12	41.249996	5
CGTTTTT	1885	0.0	40.941643	1
CGTTATT	165	0.0	40.90909	1
CGCAGTA	50	1.0786607E-9	40.5	37
CGCATCG	45	1.9246727E-8	40.0	21
CGATGAA	225	0.0	40.0	19
GCATCGT	45	1.9246727E-8	40.0	35