SRR2935970.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935970.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	869780
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13650	1.5693623674952286	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTC	5547	0.6377474763733358	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCG	3525	0.4052748971004162	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGC	3520	0.4047000390903447	No Hit
GCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	1629	0.18728873968129872	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1565	0.17993055715238337	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCT	1539	0.1769412955000115	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTT	894	0.10278461220078641	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTG	875	0.10060015176251466	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACCGT	25	3.8900194E-5	45.000004	40
CGCGCAA	25	3.8900194E-5	45.000004	18
CATACCG	20	7.032338E-4	45.000004	1
CTCGACG	25	3.8900194E-5	45.000004	1
CCGCGTA	20	7.032338E-4	45.000004	40
CGTTATT	1040	0.0	44.134613	1
CGTTTTT	7875	0.0	43.285713	1
CCCATCG	180	0.0	42.500004	40
CGATCAC	75	0.0	42.0	34
CCGATGA	1025	0.0	41.707317	18
CGATGAA	1040	0.0	41.322113	19
TCTACGG	40	3.4569348E-7	39.375004	2
TATAGCG	40	3.4569348E-7	39.375004	1
TACGGCT	520	0.0	39.375	7
ACGGGAC	260	0.0	38.942307	5
TAGCCGT	35	6.246535E-6	38.57143	44
ATAACGG	70	0.0	38.57143	2
GCTAACG	35	6.246535E-6	38.57143	1
AAGGGCG	490	0.0	37.65306	5
GCGAATC	30	1.13969334E-4	37.500004	17