SRR2935969.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935969.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	441630
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGC	3923	0.8883001607680638	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTC	3505	0.7936507936507936	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCG	3410	0.7721395738514141	No Hit
GCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	2179	0.49339945202997987	No Hit
CCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	1237	0.28009872517718454	No Hit
CTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGCT	927	0.2099042184634196	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCTTAACAT	805	0.18227928356316375	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCT	693	0.15691868758915833	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	659	0.1492199352399067	No Hit
TCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	586	0.1326902610782782	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGCTTAACATCGTA	578	0.1308787899372778	No Hit
GAACTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCT	548	0.12408577315852637	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTC	475	0.10755609899689784	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTCGAT	30	2.1624546E-6	45.000004	7
GTTTCGA	20	7.028562E-4	45.000004	28
GACGTTG	20	7.028562E-4	45.000004	1
TACGGGT	20	7.028562E-4	45.000004	4
ATCCGGC	30	2.1624546E-6	45.000004	6
TGCGACG	20	7.028562E-4	45.000004	1
AACGATA	20	7.028562E-4	45.000004	1
GCGCTAG	20	7.028562E-4	45.000004	1
GCGTAAG	30	2.1624546E-6	45.000004	1
TGGTCGA	30	2.1624546E-6	45.000004	6
ACGACGG	30	2.1624546E-6	45.000004	27
TACGTAG	20	7.028562E-4	45.000004	1
GTAGCAC	25	3.886891E-5	45.0	9
TACTCGC	25	3.886891E-5	45.0	45
GGCGATT	100	0.0	45.0	8
TATACGG	35	1.2096643E-7	45.0	2
CGCCGGT	55	6.002665E-11	40.909092	28
CGATGAA	260	0.0	40.673077	19
CCGCTTA	50	1.0786607E-9	40.5	41
CGTTAGG	50	1.0786607E-9	40.5	2