SRR2935968.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935968.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	493953
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC	1704	0.34497209248653216	No Hit
CCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC	1584	0.3206782831564946	No Hit
CTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGCT	951	0.19252843894054697	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	858	0.17370073670976793	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	582	0.11782497525068174	No Hit
TCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC	553	0.11195397132925601	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCTA	25	3.8875653E-5	45.0	23
CGGGTCC	25	3.8875653E-5	45.0	6
ACACGAA	20	7.029377E-4	45.0	16
GATCGGA	20	7.029377E-4	45.0	8
TTTCGCG	20	7.029377E-4	45.0	1
GTCTCGA	25	3.8875653E-5	45.0	43
TAGCCGT	20	7.029377E-4	45.0	44
CCGTCGG	20	7.029377E-4	45.0	2
CGCCTAT	25	3.8875653E-5	45.0	24
CTCGACG	25	3.8875653E-5	45.0	45
GTATACG	20	7.029377E-4	45.0	1
ATCGGTG	20	7.029377E-4	45.0	29
TATACGG	25	3.8875653E-5	45.0	2
TTACCGG	20	7.029377E-4	45.0	2
GATTACC	25	3.8875653E-5	45.0	14
GTAACGA	20	7.029377E-4	45.0	19
TTGTGCG	30	2.1629785E-6	44.999996	1
ACGGGCC	30	2.1629785E-6	44.999996	5
GCGATAT	30	2.1629785E-6	44.999996	9
CTCGATC	30	2.1629785E-6	44.999996	16