##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935968.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 493953 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.22330464639348 33.0 31.0 34.0 30.0 34.0 2 32.3389128115428 34.0 31.0 34.0 30.0 34.0 3 32.3821254248886 34.0 31.0 34.0 30.0 34.0 4 35.89867457025264 37.0 35.0 37.0 35.0 37.0 5 35.94474575516294 37.0 35.0 37.0 35.0 37.0 6 35.96045170289481 37.0 35.0 37.0 35.0 37.0 7 36.11112393284381 37.0 35.0 37.0 35.0 37.0 8 35.842855494348655 37.0 35.0 37.0 35.0 37.0 9 37.58067467957478 39.0 38.0 39.0 35.0 39.0 10 37.30891400598843 39.0 37.0 39.0 34.0 39.0 11 37.25945585916069 39.0 37.0 39.0 34.0 39.0 12 37.08098138891757 39.0 37.0 39.0 34.0 39.0 13 37.00053243932115 39.0 37.0 39.0 33.0 39.0 14 38.08264146588846 40.0 37.0 41.0 33.0 41.0 15 38.22012418185536 40.0 37.0 41.0 33.0 41.0 16 38.362552712505035 40.0 37.0 41.0 34.0 41.0 17 38.37219330584084 40.0 37.0 41.0 34.0 41.0 18 38.36110115739756 40.0 37.0 41.0 34.0 41.0 19 38.37428864689556 40.0 37.0 41.0 34.0 41.0 20 38.24902571702166 40.0 37.0 41.0 34.0 41.0 21 38.189700234637705 40.0 37.0 41.0 34.0 41.0 22 38.18962127975738 40.0 37.0 41.0 34.0 41.0 23 38.23344326282055 40.0 37.0 41.0 34.0 41.0 24 38.13743412834825 40.0 36.0 41.0 34.0 41.0 25 38.060602931857886 40.0 36.0 41.0 34.0 41.0 26 37.90318107188336 40.0 36.0 41.0 34.0 41.0 27 37.88413067640039 40.0 36.0 41.0 34.0 41.0 28 37.884877711037284 40.0 36.0 41.0 34.0 41.0 29 37.86782953033993 40.0 36.0 41.0 34.0 41.0 30 37.7625685034811 40.0 36.0 41.0 33.0 41.0 31 37.800124708221226 40.0 36.0 41.0 34.0 41.0 32 37.74351608351402 40.0 36.0 41.0 34.0 41.0 33 37.71723423078714 40.0 36.0 41.0 33.0 41.0 34 37.63325255641731 40.0 35.0 41.0 33.0 41.0 35 37.625462341558816 40.0 35.0 41.0 33.0 41.0 36 37.56001077025547 40.0 35.0 41.0 33.0 41.0 37 37.53075899933799 40.0 35.0 41.0 33.0 41.0 38 37.448455622296045 40.0 35.0 41.0 33.0 41.0 39 37.38982048899389 40.0 35.0 41.0 33.0 41.0 40 37.28291355655295 39.0 35.0 41.0 33.0 41.0 41 37.18796525175472 39.0 35.0 41.0 33.0 41.0 42 37.16541452324412 39.0 35.0 41.0 33.0 41.0 43 37.10903668972554 39.0 35.0 41.0 33.0 41.0 44 37.014924496865085 39.0 35.0 41.0 33.0 41.0 45 36.931110854676454 39.0 35.0 41.0 32.0 41.0 46 36.876338437057775 39.0 35.0 41.0 32.0 41.0 47 36.84904434227548 39.0 35.0 41.0 32.0 41.0 48 36.78852036529791 39.0 35.0 41.0 32.0 41.0 49 36.749518678902646 39.0 35.0 41.0 32.0 41.0 50 36.643010569831546 39.0 35.0 41.0 32.0 41.0 51 35.72890133271789 37.0 34.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 4.0 9 12.0 10 21.0 11 6.0 12 19.0 13 12.0 14 17.0 15 38.0 16 42.0 17 51.0 18 120.0 19 156.0 20 291.0 21 433.0 22 681.0 23 1012.0 24 1390.0 25 2067.0 26 2799.0 27 3515.0 28 3967.0 29 4716.0 30 5937.0 31 7769.0 32 10456.0 33 15776.0 34 33605.0 35 42445.0 36 34034.0 37 52126.0 38 90814.0 39 179457.0 40 164.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.91298969740036 21.194526604757943 24.272754695284775 11.619729002556923 2 33.5355792960059 23.92838994803149 23.4566851502066 19.07934560575601 3 33.347302273698105 23.90146430935737 25.17830643806192 17.572926978882606 4 29.25501009205329 26.036080355823326 24.971606610345518 19.737302941777862 5 26.61488036311147 29.54876273653566 23.30788556806012 20.52847133229275 6 27.529339835976295 33.58659629559897 23.304039048249532 15.580024820175197 7 80.60827649594192 6.099568177539159 8.315568485260744 4.976586841258176 8 80.27322437559849 5.575226792832517 8.43076163116734 5.720787200401658 9 74.25058659427111 7.814306219417637 10.827750818397702 7.107356367913546 10 43.08851246980988 24.848113079584493 17.670709561436006 14.392664889169618 11 32.96690170927194 24.550513915291535 22.863308857320433 19.619275518116098 12 30.928853554892875 21.881231615153666 27.22182069954024 19.968094130413217 13 27.164325350792485 24.00370075695461 28.55757531587013 20.274398576382772 14 21.06334003437574 27.356853789733034 28.819341111401286 22.76046506448994 15 19.483230185867885 26.34845825412539 34.215401060424774 19.952910499581943 16 23.67512698576585 25.25705886997346 30.330618500140698 20.73719564411999 17 22.51995635212257 25.931616975704163 26.678449164191736 24.869977507981528 18 24.175579457964623 25.41719556314062 29.128277386714927 21.278947592179822 19 25.46092441993469 27.164325350792485 26.11058137110211 21.264168858170716 20 27.305836790139953 26.494018661694536 26.568317228562233 19.631827319603282 21 24.86734567863744 26.479847272918676 28.485503681524353 20.167303366919526 22 23.06474502634866 24.682712727729157 27.590479256123558 24.662062989798624 23 22.51671717754523 25.9324267693485 28.780471016473225 22.77038503663304 24 24.019694181430218 24.700528187904517 27.757904092089735 23.521873538575534 25 23.440691725730993 26.391579765686206 26.436928209768944 23.730800298813858 26 21.455077709822596 26.872192293598786 27.350375440578357 24.322354556000267 27 22.254344036780825 27.662955787291505 27.80426477822789 22.27843539769978 28 19.72556093393501 27.13638747006294 29.421625134375134 23.716426461626916 29 22.458614483564226 25.5969697521829 28.94222729692906 23.002188467323816 30 22.857032956576838 25.8370735677281 28.490564891801444 22.81532858389361 31 22.719772933862128 26.754569766759182 27.659311715892 22.866345583486687 32 25.33277457571874 26.65051128346219 25.803872028310387 22.212842112508678 33 24.154524823211926 26.716104568653293 25.157049354898138 23.972321253236643 34 20.441823412348946 24.738386040777158 31.102149394780476 23.717641152093417 35 21.468236856543033 25.617821938524514 27.704660159974736 25.20928104495772 36 21.921923745781484 28.82642680578921 26.708613977443196 22.543035470986105 37 22.029828748889063 27.415158932125124 29.102363990096226 21.45264832888959 38 22.66875593426905 27.294499679119266 25.7479962668513 24.28874811976038 39 22.85804519863226 24.494435705421367 27.663765580935838 24.983753515010537 40 23.20342218794096 23.255046532767288 30.21502045741194 23.326510821879815 41 19.034806955317613 25.706696790990236 28.85476958334093 26.40372667035123 42 20.92284083708369 25.716009417900082 29.09710033140805 24.264049413608177 43 22.0739625025053 24.860462432660597 28.7189266995038 24.346648365330303 44 21.757738084392646 24.557599609679464 28.19357307274174 25.491089233186155 45 22.462258554963732 23.20079035859687 27.28518705220942 27.051764034229976 46 22.256975866124915 24.592218287974767 27.543308776341068 25.607497069559248 47 19.635876287824956 25.55648006996617 30.586715740161512 24.22092790204736 48 20.4102414602199 25.38541116260049 29.195895156016867 25.00845222116274 49 22.0727478120388 23.76946794533083 30.24720975477424 23.91057448785613 50 20.26974226292785 23.907335313278793 29.990910066342348 25.832012357451013 51 19.869704202626565 23.16131291843556 27.575700522114456 29.393282356823423 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 260.0 1 595.5 2 931.0 3 1190.5 4 1450.0 5 1108.0 6 766.0 7 744.5 8 723.0 9 721.0 10 719.0 11 765.0 12 811.0 13 850.0 14 889.0 15 899.0 16 909.0 17 954.0 18 999.0 19 1096.0 20 1193.0 21 1206.5 22 1220.0 23 1284.5 24 1349.0 25 1903.0 26 3325.5 27 4194.0 28 4366.5 29 4539.0 30 5453.5 31 6368.0 32 7474.5 33 8581.0 34 10290.0 35 11999.0 36 12196.5 37 12394.0 38 14597.0 39 16800.0 40 18893.5 41 20987.0 42 24178.5 43 27370.0 44 33246.0 45 39122.0 46 44692.5 47 50263.0 48 51130.5 49 51998.0 50 45669.5 51 39341.0 52 35792.0 53 32243.0 54 30070.0 55 27897.0 56 26238.5 57 24580.0 58 23470.0 59 22360.0 60 21566.5 61 20773.0 62 19589.0 63 18405.0 64 15776.5 65 13148.0 66 11433.5 67 9719.0 68 7831.5 69 5944.0 70 5106.5 71 4269.0 72 3535.5 73 2802.0 74 2149.5 75 1169.0 76 841.0 77 663.0 78 485.0 79 323.5 80 162.0 81 136.5 82 111.0 83 87.5 84 64.0 85 37.5 86 11.0 87 9.5 88 8.0 89 4.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 493953.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.97258366440276 #Duplication Level Percentage of deduplicated Percentage of total 1 69.79676701869728 20.919894389727315 2 11.662047881701234 6.990834116651223 3 4.284908070069639 3.8528929687331037 4 2.1974122356948875 2.634484883181893 5 1.3472666530441468 2.0190531238312786 6 0.958707404614448 1.724096273669338 7 0.7017054403234141 1.4722347512502074 8 0.5913907777381538 1.4180407651290423 9 0.5473326057201581 1.4764475085482704 >10 7.714380324222294 50.57007360184069 >50 0.13934015168128505 2.7250907910358206 >100 0.05464319673775884 2.921012351175651 >500 0.0027321598368879423 0.6027095852159459 >1k 0.0013660799184439711 0.6731348900102005 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC 1704 0.34497209248653216 No Hit CCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC 1584 0.3206782831564946 No Hit CTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGCT 951 0.19252843894054697 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 858 0.17370073670976793 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 582 0.11782497525068174 No Hit TCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC 553 0.11195397132925601 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1983994428619727 0.0 2 0.0 0.0 0.0 1.0932214198516863 0.0 3 0.0 0.0 0.0 1.5145165633167528 0.0 4 0.0 0.0 0.0 2.085623530983717 0.0 5 0.0 0.0 0.0 3.6631015501474837 0.0 6 2.0244841108364562E-4 0.0 0.0 4.458521357295127 0.0 7 2.0244841108364562E-4 0.0 0.0 5.292406362548664 0.0 8 2.0244841108364562E-4 0.0 0.0 6.547991408089434 0.0 9 2.0244841108364562E-4 0.0 0.0 6.954102920723226 0.0 10 2.0244841108364562E-4 0.0 0.0 7.973025773707215 0.0 11 2.0244841108364562E-4 0.0 0.0 9.588361645743623 0.0 12 2.0244841108364562E-4 0.0 0.0 10.865608671270344 0.0 13 2.0244841108364562E-4 0.0 0.0 11.367275833935617 0.0 14 2.0244841108364562E-4 0.0 0.0 11.572760971185518 0.0 15 4.0489682216729125E-4 0.0 0.0 11.990007146428912 0.0 16 4.0489682216729125E-4 0.0 0.0 12.80243262010758 0.0 17 4.0489682216729125E-4 0.0 0.0 13.702720704196553 0.0 18 4.0489682216729125E-4 0.0 0.0 14.70322075177193 0.0 19 4.0489682216729125E-4 0.0 0.0 15.332632861830984 0.0 20 4.0489682216729125E-4 0.0 0.0 15.947873583114182 0.0 21 4.0489682216729125E-4 0.0 0.0 16.694908220012834 0.0 22 4.0489682216729125E-4 0.0 0.0 17.459960765497932 0.0 23 6.073452332509368E-4 0.0 0.0 18.21570068407318 0.0 24 6.073452332509368E-4 0.0 0.0 18.79429824295024 0.0 25 6.073452332509368E-4 0.0 0.0 19.340908952876084 0.0 26 6.073452332509368E-4 0.0 0.0 19.82941696882092 0.0 27 6.073452332509368E-4 0.0 0.0 20.356795079693818 0.0 28 6.073452332509368E-4 0.0 0.0 20.865143039924853 0.0 29 6.073452332509368E-4 0.0 0.0 21.422483515638127 0.0 30 6.073452332509368E-4 0.0 0.0 22.044809931309253 0.0 31 6.073452332509368E-4 0.0 0.0 22.596279403101104 0.0 32 6.073452332509368E-4 0.0 0.0 23.118798752107995 0.0 33 6.073452332509368E-4 0.0 0.0 23.667433946144673 0.0 34 6.073452332509368E-4 0.0 0.0 24.1919777792624 0.0 35 6.073452332509368E-4 0.0 0.0 24.796083837936 0.0 36 0.0012146904665018736 0.0 0.0 25.330142746374655 0.0 37 0.0012146904665018736 0.0 0.0 25.891937087131772 0.0 38 0.0012146904665018736 0.0 0.0 26.474583614230504 0.0 39 0.0012146904665018736 0.0 0.0 27.21574724720773 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCCTA 25 3.8875653E-5 45.0 23 CGGGTCC 25 3.8875653E-5 45.0 6 ACACGAA 20 7.029377E-4 45.0 16 GATCGGA 20 7.029377E-4 45.0 8 TTTCGCG 20 7.029377E-4 45.0 1 GTCTCGA 25 3.8875653E-5 45.0 43 TAGCCGT 20 7.029377E-4 45.0 44 CCGTCGG 20 7.029377E-4 45.0 2 CGCCTAT 25 3.8875653E-5 45.0 24 CTCGACG 25 3.8875653E-5 45.0 45 GTATACG 20 7.029377E-4 45.0 1 ATCGGTG 20 7.029377E-4 45.0 29 TATACGG 25 3.8875653E-5 45.0 2 TTACCGG 20 7.029377E-4 45.0 2 GATTACC 25 3.8875653E-5 45.0 14 GTAACGA 20 7.029377E-4 45.0 19 TTGTGCG 30 2.1629785E-6 44.999996 1 ACGGGCC 30 2.1629785E-6 44.999996 5 GCGATAT 30 2.1629785E-6 44.999996 9 CTCGATC 30 2.1629785E-6 44.999996 16 >>END_MODULE