SRR2935967.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935967.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	606095
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTC	4752	0.7840355059850355	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGC	4487	0.7403129872379742	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCG	3869	0.6383487737070921	No Hit
GCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGC	2366	0.39036784662470403	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2276	0.37551868931438137	No Hit
CTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGCT	1285	0.21201296826405103	No Hit
CCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGC	1236	0.20392842706176426	No Hit
CGCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTG	998	0.16466065550779993	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAATGACAGT	945	0.15591615175838772	No Hit
GAACTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCT	903	0.14898654501357048	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCT	877	0.14469678845725506	No Hit
TCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTCTTCTGC	627	0.10344912926191438	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAATGACAGTCGTATGCCGTC	618	0.10196421353088213	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTAAGG	75	0.0	45.000004	2
TTAGGCG	20	7.030645E-4	45.0	1
CGGTTCG	20	7.030645E-4	45.0	29
CGATTAG	20	7.030645E-4	45.0	10
AAGCGCG	25	3.888616E-5	45.0	1
TGTTGCG	35	1.2106648E-7	45.0	1
AACGAGC	25	3.888616E-5	45.0	15
CGGGACG	50	2.1827873E-11	45.0	6
AGCGACT	25	3.888616E-5	45.0	19
ACGTCGC	20	7.030645E-4	45.0	11
ACGTAAG	25	3.888616E-5	45.0	1
GATTCGC	20	7.030645E-4	45.0	10
TTCGAAG	20	7.030645E-4	45.0	1
AGTACCG	20	7.030645E-4	45.0	2
TACGTCT	20	7.030645E-4	45.0	20
TGCGTAG	35	1.2106648E-7	45.0	1
CGGCGAA	120	0.0	43.124996	31
CGTTTTT	1585	0.0	41.16719	1
TTGCGCG	55	6.002665E-11	40.909092	1
CGGGAAC	140	0.0	40.17857	6