##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935966.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 347066 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.992223381143646 33.0 31.0 34.0 30.0 34.0 2 32.1050578276178 33.0 31.0 34.0 30.0 34.0 3 32.16067260982061 34.0 31.0 34.0 30.0 34.0 4 35.73894878783862 37.0 35.0 37.0 33.0 37.0 5 35.796643866008196 37.0 35.0 37.0 35.0 37.0 6 35.82076319777794 37.0 35.0 37.0 35.0 37.0 7 35.98058006258176 37.0 35.0 37.0 35.0 37.0 8 35.66505218027695 37.0 35.0 37.0 35.0 37.0 9 37.413287386260826 39.0 37.0 39.0 34.0 39.0 10 37.04031221727279 39.0 37.0 39.0 33.0 39.0 11 37.098572029527524 39.0 37.0 39.0 34.0 39.0 12 37.007937971452115 39.0 37.0 39.0 34.0 39.0 13 36.98752686808849 39.0 37.0 39.0 33.0 39.0 14 38.104910881503805 40.0 37.0 41.0 33.0 41.0 15 38.277108676735836 40.0 37.0 41.0 34.0 41.0 16 38.36770815925501 40.0 37.0 41.0 34.0 41.0 17 38.36477211827145 40.0 37.0 41.0 34.0 41.0 18 38.36321333694456 40.0 37.0 41.0 34.0 41.0 19 38.35611094143477 40.0 37.0 41.0 34.0 41.0 20 38.2262566774043 40.0 37.0 41.0 34.0 41.0 21 38.206113534601485 40.0 37.0 41.0 34.0 41.0 22 38.20116923005999 40.0 37.0 41.0 34.0 41.0 23 38.23410532866947 40.0 37.0 41.0 34.0 41.0 24 38.15118450093066 40.0 37.0 41.0 34.0 41.0 25 38.07198630807973 40.0 36.0 41.0 34.0 41.0 26 37.91832965487832 40.0 36.0 41.0 34.0 41.0 27 37.864965165127096 40.0 36.0 41.0 33.0 41.0 28 37.86656716589928 40.0 36.0 41.0 33.0 41.0 29 37.8477177251589 40.0 36.0 41.0 33.0 41.0 30 37.73413414163301 40.0 36.0 41.0 33.0 41.0 31 37.71008396097572 40.0 36.0 41.0 33.0 41.0 32 37.636195997303105 40.0 36.0 41.0 33.0 41.0 33 37.636135490079695 40.0 36.0 41.0 33.0 41.0 34 37.53613433756116 40.0 36.0 41.0 33.0 41.0 35 37.54636293961379 40.0 36.0 41.0 33.0 41.0 36 37.497308869206435 40.0 36.0 41.0 33.0 41.0 37 37.41267943273037 40.0 35.0 41.0 33.0 41.0 38 37.341491243740386 40.0 35.0 41.0 33.0 41.0 39 37.29411985040309 39.0 35.0 41.0 33.0 41.0 40 37.20796332686002 39.0 35.0 41.0 32.0 41.0 41 37.160868537972604 39.0 35.0 41.0 32.0 41.0 42 37.18250131098984 39.0 35.0 41.0 32.0 41.0 43 37.12560147061366 39.0 35.0 41.0 32.0 41.0 44 37.033670829179464 39.0 35.0 41.0 32.0 41.0 45 36.88957143598048 39.0 35.0 41.0 31.0 41.0 46 36.83691574513205 39.0 35.0 41.0 31.0 41.0 47 36.797269107316765 39.0 35.0 41.0 31.0 41.0 48 36.74525306425867 39.0 35.0 41.0 31.0 41.0 49 36.718500227622414 39.0 35.0 41.0 31.0 41.0 50 36.56143500083557 39.0 35.0 41.0 31.0 41.0 51 35.552160107875736 38.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 6.0 9 6.0 10 8.0 11 4.0 12 7.0 13 8.0 14 11.0 15 7.0 16 22.0 17 37.0 18 70.0 19 104.0 20 178.0 21 333.0 22 440.0 23 763.0 24 1093.0 25 1417.0 26 1908.0 27 2505.0 28 2986.0 29 3708.0 30 4719.0 31 6030.0 32 8014.0 33 11515.0 34 21529.0 35 29029.0 36 24778.0 37 37470.0 38 71418.0 39 116854.0 40 89.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.2462413489077 21.351846622832547 24.67830326220373 10.723608766056024 2 32.924861553710244 24.828995061458052 24.300277180709145 17.94586620412256 3 32.62866428863674 24.499951017962 25.674367411385727 17.197017282015526 4 30.21096851895605 25.305273348584993 25.61674148432863 18.867016648130328 5 25.453371981121748 30.370304207268934 24.17868647461866 19.99763733699066 6 25.38393273901794 35.2777281554517 23.741593817890546 15.596745287639816 7 77.79586591599292 7.345288792333447 9.181538958007987 5.677306333665643 8 77.14670984769467 6.243481067001666 9.594140595736835 7.015668489566826 9 70.6430477200302 8.360657627079576 12.345778612713431 8.650516040176797 10 38.52177971913123 24.228532901523053 21.233137213094917 16.016550166250802 11 30.67773852811857 25.418796424887486 23.21345219641221 20.690012850581734 12 27.80969613848663 21.798735687160367 29.705301009029984 20.68626716532302 13 25.38191583157094 24.600508260676644 30.29596676136527 19.72160914638714 14 19.960756743674114 28.80057395423349 29.511389764482836 21.72727953760956 15 19.87575850126489 25.9135150086727 34.700892625610116 19.509833864452293 16 20.755994537062115 26.30364253484928 31.245065779995734 21.69529714809287 17 20.917635262457285 25.468642851791877 27.835339676027036 25.778382209723798 18 21.716618741103996 25.702315986008422 30.998138682556053 21.58292659033152 19 22.589075276748517 27.87049149153187 27.64690289455032 21.8935303371693 20 24.560170111736674 26.699244524096283 27.949727141235385 20.79085822293166 21 22.496009404551295 27.943100159623818 29.222107610656185 20.3387828251687 22 20.69606357292273 26.627212115274908 27.087931402096434 25.588792909705937 23 20.28807200935845 27.181285403928936 28.475275595996152 24.05536699071646 24 22.259454973981892 24.619236686970204 29.308834630877122 23.81247370817078 25 20.473915624117602 26.99400114099336 27.009848270934057 25.522234963954983 26 19.712388998058007 27.613479856857197 27.94598145597667 24.728149689108122 27 23.538174295378976 25.961056398494808 27.4503984832856 23.050370822840613 28 20.09300824627016 26.375386814035373 29.14748203511724 24.384122904577225 29 21.333118196538987 25.667164170503593 27.256775368373738 25.74294226458368 30 25.44789751805132 25.234681587940045 26.122408994254698 23.195011899753936 31 24.756962652636673 26.573331873476512 24.89007854413858 23.779626929748233 32 23.112606824062283 28.033284735468182 25.552200446024674 23.30190799444486 33 25.535200797542828 26.96749321454709 25.07592215889773 22.42138382901235 34 21.782312297949094 25.212783735658345 29.057873718543448 23.947030247849113 35 21.61462085021293 25.49832020422629 27.937337566918107 24.94972137864268 36 25.707502319443563 26.989102937193504 25.991598139835077 21.31179660352786 37 23.666391983081027 27.373756000299654 28.967112883428513 19.992739133190803 38 22.408129865789217 29.006010384192056 26.418030000057623 22.1678297499611 39 23.51310701710914 26.141137420548255 27.769069859911372 22.576685702431238 40 22.98842295125423 23.52895414704984 31.22864239078446 22.253980510911468 41 20.996582782525515 24.98919513867679 28.338414019235536 25.67580805956216 42 22.074763877763885 25.79855128419378 28.292313277589855 23.834371560452478 43 24.747166245036965 24.788945042153365 27.29624912840785 23.167639584401815 44 22.96249128407853 25.322561126702126 25.916396305025557 25.79855128419378 45 23.388346885030515 23.568139777448668 26.693770061025855 26.34974327649496 46 24.791538208870936 24.38210599713023 27.518973336483548 23.307382457515285 47 21.210086842272073 24.24293938328733 31.306149262676264 23.240824511764334 48 21.30545775155158 23.719984095244133 30.136054813781815 24.838503339422473 49 23.337059809949693 22.61817636991235 30.841684290596028 23.20307952954193 50 21.1599522857324 22.08917035952816 30.708568399094123 26.04230895564532 51 20.955668374314975 21.918309485803853 27.52358341064812 29.602438729233054 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 188.0 1 384.5 2 581.0 3 745.0 4 909.0 5 677.0 6 445.0 7 435.0 8 425.0 9 435.0 10 445.0 11 435.5 12 426.0 13 455.0 14 484.0 15 507.5 16 531.0 17 517.5 18 504.0 19 581.0 20 658.0 21 755.5 22 853.0 23 830.5 24 808.0 25 1339.5 26 2187.5 27 2504.0 28 2881.5 29 3259.0 30 3835.5 31 4412.0 32 5090.0 33 5768.0 34 6428.0 35 7088.0 36 7563.0 37 8038.0 38 9211.0 39 10384.0 40 12504.0 41 14624.0 42 16754.5 43 18885.0 44 21753.0 45 24621.0 46 29171.0 47 33721.0 48 38603.0 49 43485.0 50 43296.5 51 43108.0 52 36609.5 53 30111.0 54 26318.5 55 22526.0 56 19843.5 57 17161.0 58 14924.0 59 12687.0 60 11965.5 61 11244.0 62 9929.5 63 8615.0 64 7183.0 65 5751.0 66 4754.0 67 3757.0 68 2946.5 69 2136.0 70 1828.5 71 1521.0 72 1302.0 73 1083.0 74 900.5 75 523.0 76 328.0 77 266.0 78 204.0 79 142.0 80 80.0 81 81.0 82 82.0 83 54.5 84 27.0 85 16.0 86 5.0 87 3.5 88 2.0 89 1.5 90 1.0 91 0.5 92 0.0 93 0.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 347066.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.87985561320075 #Duplication Level Percentage of deduplicated Percentage of total 1 70.43077691885031 25.270461065739013 2 12.491007181853396 8.96351068296707 3 4.683657889348539 5.041469064343625 4 2.3233923547347426 3.3345192888278827 5 1.337920088377852 2.4002189796499063 6 0.9801356906039387 2.1100276236128477 7 0.758385058266814 1.9047522472875489 8 0.5635010133623467 1.6174667997866647 9 0.5432812618305936 1.7543567908655289 >10 5.735953932553803 40.404822662832686 >50 0.09782245657624787 2.344641566755603 >100 0.05093235342399684 3.3735223829478747 >500 8.084500543491561E-4 0.2082707713634199 >1k 0.002425350163047468 1.271960073020329 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGC 1815 0.5229552880431964 TruSeq Adapter, Index 22 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGC 1424 0.41029660064656287 TruSeq Adapter, Index 22 (95% over 22bp) CTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGCT 1146 0.3301965620371918 Illumina Paired End PCR Primer 2 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGC 718 0.2068770781349945 TruSeq Adapter, Index 22 (95% over 22bp) ACTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCCGTCTTCTGC 453 0.13052272478433496 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 431 0.1241838728080538 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 409 0.11784502083177263 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGGAGTTATCGTATGCC 354 0.10199789089106971 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0011525185411420307 0.0 0.0 0.3460436919778947 0.0 2 0.0011525185411420307 0.0 0.0 1.6699993661148023 0.0 3 0.0011525185411420307 0.0 0.0 2.356612287000167 0.0 4 0.0011525185411420307 0.0 0.0 3.1936288775045667 0.0 5 0.0011525185411420307 0.0 0.0 5.551969942316447 0.0 6 0.0011525185411420307 0.0 0.0 6.72552194683432 0.0 7 0.0011525185411420307 0.0 0.0 7.953242322785868 0.0 8 0.0011525185411420307 0.0 0.0 9.950268824949722 0.0 9 0.0011525185411420307 0.0 0.0 10.645237505258367 0.0 10 0.0011525185411420307 0.0 0.0 12.314660612102598 0.0 11 0.0011525185411420307 0.0 0.0 14.707000973878166 0.0 12 0.0011525185411420307 0.0 0.0 16.467761175107906 0.0 13 0.0011525185411420307 0.0 0.0 17.21603383794437 0.0 14 0.0011525185411420307 0.0 0.0 17.505892251041587 0.0 15 0.0011525185411420307 0.0 0.0 18.08042274380089 0.0 16 0.0011525185411420307 0.0 0.0 19.266652452271327 0.0 17 0.0011525185411420307 0.0 0.0 20.638149516230342 0.0 18 0.0011525185411420307 0.0 0.0 22.160050249808393 0.0 19 0.0011525185411420307 0.0 0.0 23.00945641463007 0.0 20 0.0011525185411420307 0.0 0.0 23.875574098298305 0.0 21 0.0017287778117130459 0.0 0.0 24.926959137455125 0.0 22 0.0020169074469985537 0.0 0.0 25.976903528435514 0.0 23 0.0020169074469985537 0.0 0.0 27.030593604674614 0.0 24 0.0020169074469985537 0.0 0.0 27.903338269954418 0.0 25 0.0020169074469985537 0.0 0.0 28.691084692824997 0.0 26 0.0020169074469985537 0.0 0.0 29.370206243192936 0.0 27 0.0020169074469985537 0.0 0.0 30.07410694219543 0.0 28 0.0020169074469985537 0.0 0.0 30.759567344539654 0.0 29 0.0020169074469985537 0.0 0.0 31.463756173177437 0.0 30 0.0020169074469985537 0.0 0.0 32.23046913267217 0.0 31 0.0020169074469985537 0.0 0.0 32.97384359170878 0.0 32 0.0020169074469985537 0.0 0.0 33.618677715477745 0.0 33 0.0020169074469985537 0.0 0.0 34.31883272922153 0.0 34 0.0020169074469985537 0.0 0.0 34.94551468596751 0.0 35 0.0020169074469985537 0.0 0.0 35.60302651368904 0.0 36 0.0020169074469985537 0.0 0.0 36.21069191450618 0.0 37 0.0023050370822840613 0.0 0.0 36.84745840848715 0.0 38 0.0023050370822840613 0.0 0.0 37.529173125572655 0.0 39 0.0023050370822840613 0.0 0.0 38.17804106423562 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCATGG 35 1.2086457E-7 45.000004 2 GCTTGCG 35 1.2086457E-7 45.000004 1 ACAATAC 35 1.2086457E-7 45.000004 30 GCGATAT 45 3.8380676E-10 45.000004 9 GCGAGAC 20 7.0264743E-4 45.0 21 TCACGAC 25 3.88516E-5 45.0 25 AAATCGT 20 7.0264743E-4 45.0 37 AATCAAT 20 7.0264743E-4 45.0 37 GACACGA 20 7.0264743E-4 45.0 25 CGTTCGG 20 7.0264743E-4 45.0 2 TCGGACC 20 7.0264743E-4 45.0 6 TACGAAA 20 7.0264743E-4 45.0 20 AATCTAA 20 7.0264743E-4 45.0 10 TTGCGGA 25 3.88516E-5 45.0 3 CTCGCCG 20 7.0264743E-4 45.0 1 TCACTCG 20 7.0264743E-4 45.0 2 CGTAAGG 50 2.1827873E-11 45.0 2 AGTTACG 20 7.0264743E-4 45.0 1 CGATGTG 40 6.7921064E-9 45.0 10 TTTGCGG 20 7.0264743E-4 45.0 2 >>END_MODULE