Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935965.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 231269 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC | 1427 | 0.6170303845305684 | No Hit |
GCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC | 1285 | 0.5556300239115489 | No Hit |
CTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCT | 946 | 0.40904747285628423 | No Hit |
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC | 503 | 0.2174956436011744 | No Hit |
TCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC | 479 | 0.20711811786274856 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 431 | 0.18636306638589695 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTC | 357 | 0.154365695359084 | No Hit |
CGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTG | 336 | 0.1452853603379614 | No Hit |
ACTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC | 322 | 0.13923180365721302 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCC | 294 | 0.12712469029571624 | No Hit |
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA | 274 | 0.1184767521803614 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGC | 262 | 0.1132879893111485 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCG | 247 | 0.10680203572463234 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CACGCCG | 30 | 2.157958E-6 | 45.000004 | 26 |
TATGCCC | 65 | 0.0 | 45.000004 | 10 |
CGAATTT | 30 | 2.157958E-6 | 45.000004 | 25 |
TTAACGG | 30 | 2.157958E-6 | 45.000004 | 2 |
ACGTAAT | 30 | 2.157958E-6 | 45.000004 | 13 |
CACGTAA | 30 | 2.157958E-6 | 45.000004 | 12 |
CGTTGCC | 25 | 3.8811137E-5 | 45.0 | 23 |
GGGTACG | 25 | 3.8811137E-5 | 45.0 | 8 |
GATCCGT | 20 | 7.0215913E-4 | 45.0 | 27 |
CCGGATA | 20 | 7.0215913E-4 | 45.0 | 28 |
TGAACAG | 20 | 7.0215913E-4 | 45.0 | 32 |
CACGAGG | 20 | 7.0215913E-4 | 45.0 | 2 |
TACGGGT | 20 | 7.0215913E-4 | 45.0 | 4 |
AAGCGCG | 20 | 7.0215913E-4 | 45.0 | 1 |
GCTTGCG | 25 | 3.8811137E-5 | 45.0 | 1 |
ATCCGTC | 20 | 7.0215913E-4 | 45.0 | 28 |
GTAATAT | 25 | 3.8811137E-5 | 45.0 | 17 |
GGCTTAG | 20 | 7.0215913E-4 | 45.0 | 1 |
CGCTCAA | 20 | 7.0215913E-4 | 45.0 | 33 |
GTTAACG | 25 | 3.8811137E-5 | 45.0 | 1 |