SRR2935965.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935965.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	231269
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC	1427	0.6170303845305684	No Hit
GCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC	1285	0.5556300239115489	No Hit
CTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCT	946	0.40904747285628423	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	503	0.2174956436011744	No Hit
TCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC	479	0.20711811786274856	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	431	0.18636306638589695	No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTC	357	0.154365695359084	No Hit
CGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTG	336	0.1452853603379614	No Hit
ACTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC	322	0.13923180365721302	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCC	294	0.12712469029571624	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	274	0.1184767521803614	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGC	262	0.1132879893111485	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCG	247	0.10680203572463234	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGCCG	30	2.157958E-6	45.000004	26
TATGCCC	65	0.0	45.000004	10
CGAATTT	30	2.157958E-6	45.000004	25
TTAACGG	30	2.157958E-6	45.000004	2
ACGTAAT	30	2.157958E-6	45.000004	13
CACGTAA	30	2.157958E-6	45.000004	12
CGTTGCC	25	3.8811137E-5	45.0	23
GGGTACG	25	3.8811137E-5	45.0	8
GATCCGT	20	7.0215913E-4	45.0	27
CCGGATA	20	7.0215913E-4	45.0	28
TGAACAG	20	7.0215913E-4	45.0	32
CACGAGG	20	7.0215913E-4	45.0	2
TACGGGT	20	7.0215913E-4	45.0	4
AAGCGCG	20	7.0215913E-4	45.0	1
GCTTGCG	25	3.8811137E-5	45.0	1
ATCCGTC	20	7.0215913E-4	45.0	28
GTAATAT	25	3.8811137E-5	45.0	17
GGCTTAG	20	7.0215913E-4	45.0	1
CGCTCAA	20	7.0215913E-4	45.0	33
GTTAACG	25	3.8811137E-5	45.0	1