FastQCFastQC Report
Sat 14 Jan 2017
SRR2935965.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935965.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences231269
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC14270.6170303845305684No Hit
GCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC12850.5556300239115489No Hit
CTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCT9460.40904747285628423No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC5030.2174956436011744No Hit
TCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC4790.20711811786274856No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4310.18636306638589695No Hit
GAATCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTC3570.154365695359084No Hit
CGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTG3360.1452853603379614No Hit
ACTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC3220.13923180365721302No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCC2940.12712469029571624No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA2740.1184767521803614No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGC2620.1132879893111485No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCG2470.10680203572463234No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CACGCCG302.157958E-645.00000426
TATGCCC650.045.00000410
CGAATTT302.157958E-645.00000425
TTAACGG302.157958E-645.0000042
ACGTAAT302.157958E-645.00000413
CACGTAA302.157958E-645.00000412
CGTTGCC253.8811137E-545.023
GGGTACG253.8811137E-545.08
GATCCGT207.0215913E-445.027
CCGGATA207.0215913E-445.028
TGAACAG207.0215913E-445.032
CACGAGG207.0215913E-445.02
TACGGGT207.0215913E-445.04
AAGCGCG207.0215913E-445.01
GCTTGCG253.8811137E-545.01
ATCCGTC207.0215913E-445.028
GTAATAT253.8811137E-545.017
GGCTTAG207.0215913E-445.01
CGCTCAA207.0215913E-445.033
GTTAACG253.8811137E-545.01