SRR2935962.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935962.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	492327
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGC	1877	0.3812506728251751	No Hit
CCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGC	1453	0.2951290504075543	No Hit
CTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGCT	1089	0.22119445003016286	No Hit
TCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGC	673	0.13669776388457264	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	598	0.12146398633428594	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGTC	25	3.887545E-5	45.0	16
CGGGTAT	40	6.8012014E-9	45.0	6
TAGCGCC	20	7.029354E-4	45.0	20
TACGGTA	20	7.029354E-4	45.0	7
ACGGGTC	25	3.887545E-5	45.0	5
ATATCGG	25	3.887545E-5	45.0	1
TCGTCCA	25	3.887545E-5	45.0	18
GGTATAC	20	7.029354E-4	45.0	8
ACGTCCG	20	7.029354E-4	45.0	37
CGTAACT	35	1.2100281E-7	45.0	33
ATCGGGT	20	7.029354E-4	45.0	4
ATACGGT	20	7.029354E-4	45.0	6
CGCGTAA	35	1.2100281E-7	45.0	31
CGATCTA	20	7.029354E-4	45.0	10
TATCGAT	20	7.029354E-4	45.0	31
TAAGACG	25	3.887545E-5	45.0	1
CACGGGT	30	2.162964E-6	44.999996	4
TGCGATC	30	2.162964E-6	44.999996	30
GTATGCG	30	2.162964E-6	44.999996	1
AGCGACT	30	2.162964E-6	44.999996	19