SRR2935961.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935961.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	714220
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTGC	1860	0.26042395900422843	No Hit
GCTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTGC	1827	0.2558035339251211	No Hit
CTGTCTCTTATACACATCTGACGCGACACAAATCGTATGCCGTCTTCTGCT	1216	0.17025566352104393	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1172	0.1640950967489009	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	933	0.1306320181456694	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	830	0.1162106913836073	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTTA	30	2.1643427E-6	45.000004	6
CGATTGA	25	3.889316E-5	45.000004	10
TCTAGCG	25	3.889316E-5	45.000004	1
TCAACGG	25	3.889316E-5	45.000004	2
TATTGCG	20	7.031492E-4	45.0	1
TATCGCG	20	7.031492E-4	45.0	1
TGCGTAT	20	7.031492E-4	45.0	36
CGTAAGG	110	0.0	42.954544	2
TAGGGAC	285	0.0	41.05263	5
CGTTGAT	45	1.9264917E-8	40.0	25
GCGTAAG	45	1.9264917E-8	40.0	1
TTTACGG	40	3.4557706E-7	39.375	2
GCTACGA	115	0.0	39.130432	10
TCAAGCG	190	0.0	39.078945	17
GGCGTAG	35	6.244967E-6	38.571426	1
TACGGTT	35	6.244967E-6	38.571426	33
ATTTGCG	35	6.244967E-6	38.571426	1
TCGTTAG	30	1.139489E-4	37.500004	1
GATCGCC	30	1.139489E-4	37.500004	10
ATACGGA	30	1.139489E-4	37.500004	4