SRR2935960.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935960.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	463329
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC	1651	0.3563342678744477	No Hit
CCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC	1496	0.3228807175894451	No Hit
CTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGCT	940	0.20287959527679036	Illumina Single End Adapter 2 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTC	758	0.1635986523614969	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGC	705	0.15215969645759275	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCG	684	0.1476272799673666	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	665	0.1435265221904953	No Hit
GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC	637	0.1374833002035271	No Hit
TCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC	541	0.11676368196249318	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTCGAC	20	7.0289226E-4	45.0	24
ATTACCC	20	7.0289226E-4	45.0	18
GCACGAG	20	7.0289226E-4	45.0	1
ATATGCG	20	7.0289226E-4	45.0	1
CTGCGAC	20	7.0289226E-4	45.0	32
TGTTACG	25	3.8871884E-5	45.0	1
ATGCGAG	40	6.7993824E-9	45.0	1
TATCGTG	25	3.8871884E-5	45.0	1
TTCGACG	20	7.0289226E-4	45.0	25
ATCGCGG	35	1.209828E-7	45.0	2
TTTAGCG	65	0.0	44.999996	1
TATGCGG	65	0.0	41.53846	2
CGATGAA	110	0.0	40.909092	19
TACACGG	45	1.9239451E-8	40.0	2
TAAGGGA	260	0.0	38.942307	4
GTTTGCG	35	6.2402196E-6	38.571426	1
TTAGACG	35	6.2402196E-6	38.571426	1
CGTAAGG	35	6.2402196E-6	38.571426	2
TTTGCGC	70	0.0	38.571426	13
GCGTAAG	35	6.2402196E-6	38.571426	1