##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935960.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 463329 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.08943752711356 33.0 31.0 34.0 30.0 34.0 2 32.204919182697395 33.0 31.0 34.0 30.0 34.0 3 32.25575994595633 34.0 31.0 34.0 30.0 34.0 4 35.81878535554649 37.0 35.0 37.0 35.0 37.0 5 35.85293819294713 37.0 35.0 37.0 35.0 37.0 6 35.87153620861202 37.0 35.0 37.0 35.0 37.0 7 36.0460946757056 37.0 35.0 37.0 35.0 37.0 8 35.76433592544391 37.0 35.0 37.0 35.0 37.0 9 37.50735870191592 39.0 37.0 39.0 35.0 39.0 10 37.19889538535252 39.0 37.0 39.0 34.0 39.0 11 37.128489690910776 39.0 37.0 39.0 34.0 39.0 12 36.988019312410835 39.0 35.0 39.0 33.0 39.0 13 36.957246362735766 39.0 35.0 39.0 33.0 39.0 14 38.09011523129353 40.0 37.0 41.0 33.0 41.0 15 38.202521318544704 40.0 37.0 41.0 34.0 41.0 16 38.28890701855485 40.0 37.0 41.0 34.0 41.0 17 38.21071635921775 40.0 37.0 41.0 34.0 41.0 18 38.2011508021298 40.0 37.0 41.0 34.0 41.0 19 38.23886482391562 40.0 37.0 41.0 34.0 41.0 20 38.110921181277234 40.0 36.0 41.0 34.0 41.0 21 38.09314115887415 40.0 36.0 41.0 34.0 41.0 22 38.07556185777277 40.0 36.0 41.0 34.0 41.0 23 38.09903114201788 40.0 36.0 41.0 34.0 41.0 24 37.9847279147215 40.0 36.0 41.0 34.0 41.0 25 37.91129413440557 40.0 36.0 41.0 34.0 41.0 26 37.78224112887387 40.0 36.0 41.0 33.0 41.0 27 37.72431684612878 40.0 35.0 41.0 33.0 41.0 28 37.721098830420715 40.0 36.0 41.0 33.0 41.0 29 37.71295343049971 40.0 36.0 41.0 33.0 41.0 30 37.58087665568095 40.0 35.0 41.0 33.0 41.0 31 37.62838069708565 40.0 35.0 41.0 33.0 41.0 32 37.57050389679903 40.0 35.0 41.0 33.0 41.0 33 37.493504615510794 40.0 35.0 41.0 33.0 41.0 34 37.43791776469852 40.0 35.0 41.0 33.0 41.0 35 37.41215853097906 40.0 35.0 41.0 33.0 41.0 36 37.30274599690501 40.0 35.0 41.0 33.0 41.0 37 37.30475105162854 40.0 35.0 41.0 33.0 41.0 38 37.22209272460822 39.0 35.0 41.0 33.0 41.0 39 37.14534812196085 39.0 35.0 41.0 32.0 41.0 40 37.103380103554926 39.0 35.0 41.0 32.0 41.0 41 36.99765393489292 39.0 35.0 41.0 32.0 41.0 42 36.96367807756475 39.0 35.0 41.0 32.0 41.0 43 36.89879329806681 39.0 35.0 41.0 32.0 41.0 44 36.859156236713005 39.0 35.0 41.0 32.0 41.0 45 36.77196980978959 39.0 35.0 41.0 32.0 41.0 46 36.7046785329647 39.0 35.0 41.0 31.0 41.0 47 36.658687455350304 39.0 35.0 41.0 31.0 41.0 48 36.59705306596393 39.0 35.0 41.0 31.0 41.0 49 36.5624577783821 39.0 35.0 41.0 31.0 41.0 50 36.44781354070218 38.0 35.0 40.0 31.0 41.0 51 35.538345322654095 37.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 4.0 8 8.0 9 7.0 10 15.0 11 9.0 12 11.0 13 10.0 14 13.0 15 18.0 16 45.0 17 50.0 18 87.0 19 200.0 20 276.0 21 528.0 22 754.0 23 1107.0 24 1655.0 25 2214.0 26 2731.0 27 3505.0 28 4140.0 29 4984.0 30 6351.0 31 8158.0 32 10617.0 33 15676.0 34 32298.0 35 40696.0 36 32177.0 37 48200.0 38 88577.0 39 158083.0 40 125.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.83241497942067 21.57905073932346 24.451523647343464 11.137010633912404 2 32.11842988459605 24.716562097343356 25.08239285691161 18.08261516114899 3 32.30706474233212 24.21799628341848 26.097438321365594 17.377500652883803 4 29.42790112425512 25.659088897953726 25.701175622505822 19.211834355285337 5 26.060315672017076 29.408260652797473 23.6840344549985 20.84738922018695 6 26.208158781341123 34.26873776517335 23.549572765788458 15.97353068769708 7 79.318583555098 5.9212784004454715 9.334619676299132 5.4255183681574 8 79.41937586466636 5.7792626837517185 8.917421529841645 5.883939921740276 9 73.73529392720938 7.511509100444824 10.928951134075355 7.82424583827043 10 42.22118624131017 24.530517191887405 17.902829307036686 15.345467259765739 11 31.913823654465833 24.51346667270989 23.91669850149678 19.6560111713275 12 30.208124248644054 20.906742293273247 28.2926387081318 20.592494749950898 13 26.052977473890042 22.740428507604747 29.673083273440685 21.533510745064522 14 20.710553408053457 26.289958107521873 30.10538947486559 22.89409900955908 15 20.527098454877635 25.095558447668935 33.317793619652555 21.05954947780087 16 23.736265159314442 24.511955867213146 30.31107485177919 21.440704121693223 17 22.4395623843964 25.12037882368684 28.45019413850633 23.98986465341043 18 23.590796172913848 26.019092264891686 28.7661683166821 21.62394324551237 19 24.735339251374295 27.751122852228114 26.098949126862337 21.414588769535257 20 26.57269456476931 26.839459649622622 26.924712245510207 19.663133540097856 21 24.849081322343302 27.56896287519236 27.810907584027767 19.771048218436576 22 22.62301733757222 25.415417554264895 27.700402953408915 24.261162154753965 23 23.63353038553598 25.03685286265267 27.982276093229647 23.3473406585817 24 24.5477835404216 24.038857917376205 28.270192455037353 23.143166087164843 25 22.63229799990935 25.544267680201326 25.98995530174023 25.83347901814909 26 20.773791409559948 26.59902574628396 27.884937053368127 24.74224579078797 27 21.75257754209212 26.02297719331188 27.8383179123258 24.3861273522702 28 19.009170589365223 26.882409691601435 28.799406037610424 25.309013681422922 29 21.716749868883667 24.614690640991608 27.81198673081115 25.85657275931358 30 22.675032212531484 24.650518314200063 29.186388074133067 23.488061399135386 31 24.556848373402055 25.19613492788062 24.930880648524052 25.31613605019328 32 25.08023456334484 25.285488281545078 24.677065325071386 24.9572118300387 33 23.645185170796562 25.978948004549686 25.930386399297262 24.445480425356497 34 22.630787194412612 24.403177871447717 27.139678284760937 25.826356649378734 35 22.064882621204372 24.764044555812394 27.173347664402613 25.99772515858062 36 21.768980573199606 28.128608397056954 27.327449825070303 22.774961204673136 37 23.44079477002303 26.338088054060936 27.027231189931992 23.193885985984043 38 22.134595503411184 27.038022657765865 24.88318236069834 25.944199478124613 39 24.115477338996698 24.64296428671635 26.48701031016837 24.754548064118588 40 24.99239201517712 22.87510602617147 28.176954172952694 23.955547785698716 41 21.582935667743655 24.53181216802747 27.312125940746206 26.573126223482667 42 22.61222586973835 23.551731059355234 28.05824802678011 25.77779504412631 43 21.95891040707575 23.06093510227074 28.327818893270223 26.652335597383285 44 21.35760981937241 23.436694012246157 26.798883730567262 28.406812437814168 45 23.168633951252783 22.774961204673136 26.3480162044681 27.708388639605978 46 23.568997407889427 24.436199763019367 27.030036971568798 24.96476585752241 47 21.307753237979924 24.100153454672597 29.46394462682025 25.12814868052723 48 21.355451525805638 22.62560728985235 29.923876985899867 26.09506419844214 49 22.363158792132587 22.079774846815113 30.507695395712336 25.04937096533996 50 20.91731793175044 22.274021267824807 29.25523763891317 27.55342316151158 51 20.130619926661183 21.914017900886844 28.12947171448366 29.825890457968313 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 322.0 1 527.5 2 733.0 3 1111.5 4 1490.0 5 1054.5 6 619.0 7 647.0 8 675.0 9 655.0 10 635.0 11 637.5 12 640.0 13 663.0 14 686.0 15 739.0 16 792.0 17 774.0 18 756.0 19 825.0 20 894.0 21 1089.0 22 1284.0 23 1485.5 24 1687.0 25 2191.0 26 2926.0 27 3157.0 28 4301.0 29 5445.0 30 5985.0 31 6525.0 32 7325.0 33 8125.0 34 9589.5 35 11054.0 36 11493.5 37 11933.0 38 13112.5 39 14292.0 40 15499.0 41 16706.0 42 18218.5 43 19731.0 44 22603.5 45 25476.0 46 27550.5 47 29625.0 48 34503.5 49 39382.0 50 43168.5 51 46955.0 52 47247.5 53 47540.0 54 40989.5 55 34439.0 56 31456.5 57 28474.0 58 26269.0 59 24064.0 60 23816.5 61 23569.0 62 20849.5 63 18130.0 64 15436.5 65 12743.0 66 10250.5 67 7758.0 68 6461.5 69 5165.0 70 4108.0 71 3051.0 72 2907.0 73 2763.0 74 2078.5 75 1147.5 76 901.0 77 680.0 78 459.0 79 382.5 80 306.0 81 232.5 82 159.0 83 107.5 84 56.0 85 41.5 86 27.0 87 21.0 88 15.0 89 7.5 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 463329.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.06617644950241 #Duplication Level Percentage of deduplicated Percentage of total 1 70.76186901989844 22.69062577888641 2 11.359531338358632 7.285134725589202 3 4.022639412273992 3.8697199556010133 4 2.029302287575372 2.6028786089108302 5 1.252261196590308 2.007761424536492 6 0.9698471402247784 1.8659573716495828 7 0.7259829865770462 1.6295648982841409 8 0.6153333525404504 1.578511028626076 9 0.5557484693081266 1.6038655630537733 >10 7.55566627127249 48.506706195428954 >50 0.10007768264984149 2.1972570317043667 >100 0.04561363767033592 2.398754124626685 >500 0.004765603935706738 1.076252078122457 >1k 0.0013616011244876392 0.6870112149799943 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC 1651 0.3563342678744477 No Hit CCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC 1496 0.3228807175894451 No Hit CTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGCT 940 0.20287959527679036 Illumina Single End Adapter 2 (95% over 21bp) GAATCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTC 758 0.1635986523614969 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGC 705 0.15215969645759275 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCG 684 0.1476272799673666 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 665 0.1435265221904953 No Hit GAGGAGCTGAGAACCCCAGTCTAATAATGTCCATCGACACCTCCTTATCCC 637 0.1374833002035271 No Hit TCTGTCTCTTATACACATCTGACGCCTCCAGGTTCGTATGCCGTCTTCTGC 541 0.11676368196249318 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 6.474880700323097E-4 0.0 0.0 0.21237608697059757 0.0 2 6.474880700323097E-4 0.0 0.0 1.143032272963704 0.0 3 6.474880700323097E-4 0.0 0.0 1.5725326927518026 0.0 4 6.474880700323097E-4 0.0 0.0 2.1917471170593683 0.0 5 6.474880700323097E-4 0.0 0.0 3.9162236769120864 0.0 6 6.474880700323097E-4 0.0 0.0 4.827671050160901 0.0 7 6.474880700323097E-4 0.0 0.0 5.740197570193103 0.0 8 6.474880700323097E-4 0.0 0.0 7.159275590347248 0.0 9 6.474880700323097E-4 0.0 0.0 7.677266046373096 0.0 10 6.474880700323097E-4 0.0 0.0 8.964688158954004 0.0 11 6.474880700323097E-4 0.0 0.0 10.709884337047757 0.0 12 6.474880700323097E-4 0.0 0.0 12.134142261762161 0.0 13 6.474880700323097E-4 0.0 0.0 12.69832020011698 0.0 14 6.474880700323097E-4 0.0 0.0 12.908537993520802 0.0 15 6.474880700323097E-4 0.0 0.0 13.345160782079256 0.0 16 6.474880700323097E-4 0.0 0.0 14.187974419904647 0.0 17 6.474880700323097E-4 0.0 0.0 15.174314579920532 0.0 18 6.474880700323097E-4 0.0 0.0 16.202093976418485 0.0 19 6.474880700323097E-4 0.0 0.0 16.884762231589217 0.0 20 6.474880700323097E-4 0.0 0.0 17.53850935296517 0.0 21 6.474880700323097E-4 0.0 0.0 18.355639297345945 0.0 22 6.474880700323097E-4 0.0 0.0 19.17600668207688 0.0 23 6.474880700323097E-4 0.0 0.0 19.937452652434878 0.0 24 6.474880700323097E-4 0.0 0.0 20.597027166441126 0.0 25 6.474880700323097E-4 0.0 0.0 21.140053827841555 0.0 26 6.474880700323097E-4 0.0 0.0 21.653727696733853 0.0 27 6.474880700323097E-4 0.0 0.0 22.159847538142444 0.0 28 6.474880700323097E-4 0.0 0.0 22.691866902352324 0.0 29 6.474880700323097E-4 0.0 0.0 23.205540771244625 0.0 30 6.474880700323097E-4 0.0 0.0 23.815906191928413 2.1582935667743654E-4 31 6.474880700323097E-4 0.0 0.0 24.37857332478649 2.1582935667743654E-4 32 6.474880700323097E-4 0.0 0.0 24.95462187775857 2.1582935667743654E-4 33 6.474880700323097E-4 0.0 0.0 25.52527469681371 2.1582935667743654E-4 34 6.474880700323097E-4 0.0 0.0 26.053840791316752 2.1582935667743654E-4 35 8.633174267097462E-4 0.0 0.0 26.630536832358864 2.1582935667743654E-4 36 0.0010791467833871828 0.0 0.0 27.1763692753961 2.1582935667743654E-4 37 0.0010791467833871828 0.0 0.0 27.709899445102725 2.1582935667743654E-4 38 0.0010791467833871828 0.0 0.0 28.280768093514542 2.1582935667743654E-4 39 0.0010791467833871828 0.0 0.0 28.863723185900298 2.1582935667743654E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTTCGAC 20 7.0289226E-4 45.0 24 ATTACCC 20 7.0289226E-4 45.0 18 GCACGAG 20 7.0289226E-4 45.0 1 ATATGCG 20 7.0289226E-4 45.0 1 CTGCGAC 20 7.0289226E-4 45.0 32 TGTTACG 25 3.8871884E-5 45.0 1 ATGCGAG 40 6.7993824E-9 45.0 1 TATCGTG 25 3.8871884E-5 45.0 1 TTCGACG 20 7.0289226E-4 45.0 25 ATCGCGG 35 1.209828E-7 45.0 2 TTTAGCG 65 0.0 44.999996 1 TATGCGG 65 0.0 41.53846 2 CGATGAA 110 0.0 40.909092 19 TACACGG 45 1.9239451E-8 40.0 2 TAAGGGA 260 0.0 38.942307 4 GTTTGCG 35 6.2402196E-6 38.571426 1 TTAGACG 35 6.2402196E-6 38.571426 1 CGTAAGG 35 6.2402196E-6 38.571426 2 TTTGCGC 70 0.0 38.571426 13 GCGTAAG 35 6.2402196E-6 38.571426 1 >>END_MODULE