Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935958.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 259755 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC | 1321 | 0.5085561394390868 | RNA PCR Primer, Index 10 (95% over 23bp) |
GCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC | 1226 | 0.47198321495255147 | RNA PCR Primer, Index 35 (95% over 24bp) |
CTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGCT | 783 | 0.3014378933995496 | TruSeq Adapter, Index 10 (95% over 24bp) |
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGC | 421 | 0.16207580219822526 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCG | 399 | 0.15360628284344863 | No Hit |
TCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC | 396 | 0.1524513483859791 | RNA PCR Primer, Index 35 (95% over 24bp) |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 384 | 0.14783161055610095 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTC | 375 | 0.14436680718369233 | No Hit |
CGCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTG | 315 | 0.12126811803430154 | TruSeq Adapter, Index 10 (95% over 22bp) |
ACTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGC | 305 | 0.11741833650940309 | RNA PCR Primer, Index 35 (95% over 24bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TGCGGGC | 30 | 2.158993E-6 | 45.000004 | 4 |
CTACGAA | 60 | 0.0 | 45.000004 | 11 |
AACCGCC | 20 | 7.0231955E-4 | 45.0 | 25 |
TCGTTAG | 20 | 7.0231955E-4 | 45.0 | 1 |
GGGTAAC | 25 | 3.8824433E-5 | 45.0 | 7 |
ATTACCG | 20 | 7.0231955E-4 | 45.0 | 1 |
GGATCCG | 25 | 3.8824433E-5 | 45.0 | 8 |
CACGAGG | 20 | 7.0231955E-4 | 45.0 | 2 |
CCTCGCC | 25 | 3.8824433E-5 | 45.0 | 40 |
ACGGGAT | 40 | 6.7793735E-9 | 45.0 | 5 |
CATTACA | 35 | 1.2070814E-7 | 45.0 | 7 |
GTGTGAC | 20 | 7.0231955E-4 | 45.0 | 22 |
GTTACAA | 25 | 3.8824433E-5 | 45.0 | 9 |
CCACTCA | 20 | 7.0231955E-4 | 45.0 | 40 |
CGGATGG | 20 | 7.0231955E-4 | 45.0 | 2 |
TACGAGC | 20 | 7.0231955E-4 | 45.0 | 24 |
AACGAAG | 20 | 7.0231955E-4 | 45.0 | 35 |
AGCGACT | 55 | 1.8189894E-12 | 45.0 | 19 |
GCGATGA | 40 | 6.7793735E-9 | 45.0 | 9 |
CTCGCCA | 25 | 3.8824433E-5 | 45.0 | 41 |