##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935957.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 313726 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.05772871869083 33.0 31.0 34.0 30.0 34.0 2 32.163818108795574 33.0 31.0 34.0 30.0 34.0 3 32.22206957663694 34.0 31.0 34.0 30.0 34.0 4 35.805986752771524 37.0 35.0 37.0 35.0 37.0 5 35.83522564275833 37.0 35.0 37.0 35.0 37.0 6 35.84740187297196 37.0 35.0 37.0 35.0 37.0 7 36.00782529978389 37.0 35.0 37.0 35.0 37.0 8 35.683322389601116 37.0 35.0 37.0 35.0 37.0 9 37.452107890324676 39.0 37.0 39.0 34.0 39.0 10 37.19151106379452 39.0 37.0 39.0 34.0 39.0 11 37.14451782765853 39.0 37.0 39.0 34.0 39.0 12 36.994425071559256 39.0 35.0 39.0 33.0 39.0 13 36.90637690213753 39.0 35.0 39.0 33.0 39.0 14 38.03366950778705 40.0 37.0 41.0 33.0 41.0 15 38.19913555140473 40.0 37.0 41.0 33.0 41.0 16 38.31625048609296 40.0 37.0 41.0 34.0 41.0 17 38.280735418804944 40.0 37.0 41.0 34.0 41.0 18 38.298333577707936 40.0 37.0 41.0 34.0 41.0 19 38.29569751949153 40.0 37.0 41.0 34.0 41.0 20 38.15328981340405 40.0 37.0 41.0 34.0 41.0 21 38.129351727303444 40.0 36.0 41.0 34.0 41.0 22 38.13688059006904 40.0 36.0 41.0 34.0 41.0 23 38.16539910622645 40.0 36.0 41.0 34.0 41.0 24 38.08214174151967 40.0 36.0 41.0 34.0 41.0 25 38.007583050177544 40.0 36.0 41.0 34.0 41.0 26 37.82402478595972 40.0 36.0 41.0 34.0 41.0 27 37.73491518076283 40.0 36.0 41.0 33.0 41.0 28 37.745752663151926 40.0 36.0 41.0 33.0 41.0 29 37.740091672351035 40.0 36.0 41.0 33.0 41.0 30 37.603440581909055 40.0 36.0 41.0 33.0 41.0 31 37.62403817343797 40.0 36.0 41.0 33.0 41.0 32 37.54986198147428 40.0 35.0 41.0 33.0 41.0 33 37.51926521869402 40.0 35.0 41.0 33.0 41.0 34 37.4733971682296 40.0 35.0 41.0 33.0 41.0 35 37.446290712277595 40.0 35.0 41.0 33.0 41.0 36 37.373188706068355 40.0 35.0 41.0 33.0 41.0 37 37.315220925266 40.0 35.0 41.0 33.0 41.0 38 37.28339060199027 40.0 35.0 41.0 33.0 41.0 39 37.276639487960836 40.0 35.0 41.0 33.0 41.0 40 37.19338212325405 39.0 35.0 41.0 33.0 41.0 41 37.11062519523406 39.0 35.0 41.0 32.0 41.0 42 37.10665357668794 39.0 35.0 41.0 32.0 41.0 43 37.048347921434626 39.0 35.0 41.0 32.0 41.0 44 36.975701726984695 39.0 35.0 41.0 32.0 41.0 45 36.86241816107049 39.0 35.0 41.0 32.0 41.0 46 36.805572378444886 39.0 35.0 41.0 32.0 41.0 47 36.77354124299548 39.0 35.0 41.0 31.0 41.0 48 36.734864180845705 39.0 35.0 41.0 32.0 41.0 49 36.69618393120111 39.0 35.0 41.0 31.0 41.0 50 36.589817229047 39.0 35.0 41.0 31.0 41.0 51 35.63726308944748 38.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 3.0 9 11.0 10 6.0 11 10.0 12 6.0 13 7.0 14 8.0 15 12.0 16 20.0 17 30.0 18 53.0 19 115.0 20 203.0 21 314.0 22 441.0 23 681.0 24 991.0 25 1422.0 26 1841.0 27 2271.0 28 2868.0 29 3432.0 30 4309.0 31 5589.0 32 7197.0 33 10506.0 34 20891.0 35 27622.0 36 21616.0 37 32176.0 38 59879.0 39 109093.0 40 102.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.17111109694447 22.079457870880958 23.92310487495458 10.826326157219993 2 31.81056080783869 25.7916143386267 24.447129023415336 17.950695830119276 3 32.105722828200406 25.10152171002722 25.469358612292254 17.32339684948012 4 29.977432536672126 25.761970636797717 25.052434289794277 19.20816253673588 5 25.761333137833653 31.389173992592262 23.645155326622593 19.204337542951492 6 26.312132242785108 34.541287620407616 23.913861139975648 15.232718996831629 7 78.38209137910151 6.967863677221524 9.296328643465955 5.353716300211012 8 77.77200487049208 6.697245366976279 9.242459981002531 6.288289781529105 9 71.46459012004107 8.266767816502298 11.705755978146536 8.562886085310112 10 40.596890280053294 25.84357050419793 18.702944607715015 14.856594608033763 11 31.87654195061933 24.351504178805712 23.861267475440354 19.910686395134608 12 29.731676686025388 21.650102318583734 28.91886550684355 19.699355488547333 13 24.426729056565282 25.687702007484237 29.143265142194142 20.742303793756335 14 19.267449940393846 29.163346359562166 28.844915627012107 22.724288073031882 15 18.67521340277822 26.020795216207777 35.08889923053875 20.215092150475257 16 21.63416484448213 24.732409809834056 31.407023963586063 22.226401382097755 17 20.456385508373547 26.22288238781612 28.523297399641727 24.797434704168605 18 22.14671401158973 26.251569841199007 29.781401605222392 21.820314541988868 19 23.526261769824625 27.360499289188656 27.409586709421596 21.703652231565123 20 25.184715324837597 27.214512026417957 27.70124248548096 19.899530163263485 21 22.901831534523755 28.566966078680124 28.650797192454565 19.88040519434156 22 21.38299025264084 25.772489369704775 27.78539234873743 25.059128028916955 23 21.217559271466182 26.057770156123496 29.00715911336644 23.71751145904388 24 22.230863874846204 25.632558347092687 29.631270599185278 22.50530717887583 25 21.83688951505454 27.566411454581385 26.09506384552125 24.501635184842822 26 20.847172373344893 26.9636561840587 28.40759133766408 23.781580104932328 27 21.859839477760847 27.61900511911668 28.162154236499365 22.359001166623106 28 20.035317442609156 27.421380440256787 29.89041392807737 22.652888189056693 29 23.450399393100987 24.437885288436405 28.39101636459841 23.7206989538642 30 22.998731377061514 26.207263663196546 28.8289781529105 21.96502680683144 31 25.905089154230126 27.453255388459997 23.95242982730153 22.68922563000835 32 25.937282851915366 28.071948133084284 24.354691673626032 21.63607734137432 33 23.17978108285574 26.5276068926388 25.97170779597483 24.32090422853063 34 22.47725722445701 26.906281277292926 26.426882056316657 24.189579441933407 35 23.302499633438096 27.172118345307688 25.472546107112574 24.05283591414164 36 23.714323964223556 27.819179793832838 25.61757712143718 22.848919120506427 37 22.913625265358945 28.80124694797371 27.476842850130367 20.808284936536978 38 22.654800685948885 27.803879818695293 25.080484244213103 24.46083525114272 39 23.5488929830489 25.68228326628969 26.187182445828526 24.58164130483288 40 22.49574469441487 25.781733104683706 28.214110402070595 23.508411798830828 41 20.034361194163058 27.305355628797102 26.62355048673046 26.03673269030938 42 22.095395344982567 25.298827639405086 27.65279256421208 24.95298445140027 43 24.057298406890087 23.620930365988155 27.739811172806846 24.581960054314912 44 23.297399641725583 24.435654042062183 26.48808195686682 25.778864359345416 45 22.604119518305783 24.605228766503252 26.031632698596862 26.7590190165941 46 23.236837240139486 26.49573194443559 26.548006859488854 23.719423955936072 47 20.955547197235806 25.376283763538883 30.141588519918656 23.526580519306656 48 21.27493417823196 24.125192046562923 28.483772463869744 26.11610131133537 49 21.816170798722453 23.017218847019375 30.043732428934806 25.122877925323372 50 21.349202807545435 22.75170052848664 29.97169504599555 25.92740161797237 51 20.109904821404665 23.806123815048803 26.687937882100943 29.396033481445592 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 219.0 1 380.0 2 541.0 3 789.5 4 1038.0 5 748.0 6 458.0 7 447.5 8 437.0 9 470.0 10 503.0 11 499.0 12 495.0 13 539.5 14 584.0 15 498.0 16 412.0 17 484.0 18 556.0 19 674.0 20 792.0 21 840.0 22 888.0 23 936.5 24 985.0 25 1486.0 26 2352.5 27 2718.0 28 3202.0 29 3686.0 30 4439.5 31 5193.0 32 5616.0 33 6039.0 34 6753.0 35 7467.0 36 8351.0 37 9235.0 38 9558.0 39 9881.0 40 11747.5 41 13614.0 42 15039.0 43 16464.0 44 17916.5 45 19369.0 46 20587.0 47 21805.0 48 25712.5 49 29620.0 50 32241.0 51 34862.0 52 34018.5 53 33175.0 54 27860.5 55 22546.0 56 19913.0 57 17280.0 58 15464.0 59 13648.0 60 12571.5 61 11495.0 62 9919.5 63 8344.0 64 7327.0 65 6310.0 66 5179.0 67 4048.0 68 3350.5 69 2653.0 70 2199.0 71 1745.0 72 1517.0 73 1289.0 74 941.5 75 491.5 76 389.0 77 281.0 78 173.0 79 151.0 80 129.0 81 80.0 82 31.0 83 24.5 84 18.0 85 12.0 86 6.0 87 5.0 88 4.0 89 2.0 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 313726.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.01690525633382 #Duplication Level Percentage of deduplicated Percentage of total 1 70.57598013097875 22.59624469226445 2 11.956996633786456 7.656520567484868 3 4.528026632572407 4.349201990796811 4 2.146999638090843 2.7496113599255008 5 1.3389996258076626 2.1435312078875186 6 0.9059997449712636 1.7404384798204529 7 0.6699998113776443 1.5015924337847697 8 0.5479998457234309 1.403620731281011 9 0.47099986740097205 1.3571962317290442 >10 6.640998130381856 46.58298318835038 >50 0.1579999555187974 3.31022690253517 >100 0.05599998423451046 3.5381872037833606 >500 9.999997184734011E-4 0.2673410836267402 >1k 0.0019999994369468022 0.8033039267299296 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTGC 1435 0.45740550671605157 TruSeq Adapter, Index 18 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTGC 1074 0.3423369437024665 RNA PCR Primer, Index 34 (96% over 25bp) CTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTGCT 835 0.26615581749679657 RNA PCR Primer, Index 34 (96% over 26bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 466 0.14853725862695472 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGC 460 0.1466247617347622 No Hit TCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTGC 455 0.14503101432460172 TruSeq Adapter, Index 18 (95% over 23bp) GAATCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTC 451 0.14375601639647337 RNA PCR Primer, Index 34 (95% over 22bp) GAATGATACCTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCG 450 0.14343726691444125 No Hit ACTGTCTCTTATACACATCTGACGCGTGGCAACTCGTATGCCGTCTTCTGC 378 0.12048730420813067 TruSeq Adapter, Index 3 (95% over 24bp) GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 376 0.11984980524406648 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 368 0.11729980938780975 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.187494820320917E-4 0.0 0.0 0.27476205351166305 0.0 2 3.187494820320917E-4 0.0 0.0 1.3849664994294384 0.0 3 3.187494820320917E-4 0.0 0.0 1.9520218279645296 0.0 4 3.187494820320917E-4 0.0 0.0 2.6405207091538476 0.0 5 3.187494820320917E-4 0.0 0.0 4.595411282456666 0.0 6 3.187494820320917E-4 0.0 0.0 5.565047206798289 0.0 7 3.187494820320917E-4 0.0 0.0 6.663457921880877 0.0 8 3.187494820320917E-4 0.0 0.0 8.297686516259411 0.0 9 3.187494820320917E-4 0.0 0.0 8.870798084953112 0.0 10 3.187494820320917E-4 0.0 0.0 10.30899574788191 0.0 11 3.187494820320917E-4 0.0 0.0 12.179417708446223 0.0 12 3.187494820320917E-4 0.0 0.0 13.78049635669342 0.0 13 3.187494820320917E-4 0.0 0.0 14.392495362195037 0.0 14 3.187494820320917E-4 0.0 0.0 14.637613713877714 0.0 15 3.187494820320917E-4 0.0 0.0 15.159725365446281 0.0 16 3.187494820320917E-4 0.0 0.0 16.124580047557423 0.0 17 3.187494820320917E-4 0.0 0.0 17.27462817872921 0.0 18 3.187494820320917E-4 0.0 0.0 18.47089498479565 0.0 19 3.187494820320917E-4 0.0 0.0 19.198600052274916 0.0 20 3.187494820320917E-4 0.0 0.0 19.931723860948726 0.0 21 3.187494820320917E-4 0.0 0.0 20.812109930321363 0.0 22 3.187494820320917E-4 0.0 0.0 21.71098346965186 0.0 23 3.187494820320917E-4 0.0 0.0 22.569057075282252 0.0 24 3.187494820320917E-4 0.0 0.0 23.32194335184205 0.0 25 3.187494820320917E-4 0.0 0.0 23.929798614077253 0.0 26 3.187494820320917E-4 0.0 0.0 24.502910182770954 0.0 27 3.187494820320917E-4 0.0 0.0 25.09195922556626 0.0 28 3.187494820320917E-4 0.0 0.0 25.66060830151151 0.0 29 3.187494820320917E-4 0.0 0.0 26.263044822552164 0.0 30 6.374989640641834E-4 0.0 0.0 26.872493832197524 0.0 31 9.562484460962751E-4 0.0 0.0 27.49692406749839 0.0 32 9.562484460962751E-4 0.0 0.0 28.087248108221825 0.0 33 9.562484460962751E-4 0.0 0.0 28.666097167592103 0.0 34 9.562484460962751E-4 0.0 0.0 29.25546495986944 0.0 35 9.562484460962751E-4 0.0 0.0 29.870332710709345 0.0 36 9.562484460962751E-4 0.0 0.0 30.432288047531923 0.0 37 9.562484460962751E-4 0.0 0.0 31.001255872959206 0.0 38 0.0015937474101604585 0.0 0.0 31.590942414718576 0.0 39 0.0015937474101604585 0.0 0.0 32.234178869459335 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATAATC 20 7.025436E-4 45.000004 27 ATTAGCG 20 7.025436E-4 45.000004 1 TACTTAT 25 3.8842998E-5 45.000004 23 TTTACGG 20 7.025436E-4 45.000004 2 GAGTCGT 20 7.025436E-4 45.000004 39 TCCGACC 20 7.025436E-4 45.000004 29 CTATAAC 25 3.8842998E-5 45.000004 34 CACGCGA 20 7.025436E-4 45.000004 22 GAATCCG 25 3.8842998E-5 45.000004 9 CGCGATA 20 7.025436E-4 45.000004 24 CCGCTTA 20 7.025436E-4 45.000004 16 TACGGGC 45 3.8198777E-10 45.000004 4 CGACAGG 35 1.2081546E-7 45.000004 2 CCTCGTG 40 6.7884685E-9 45.000004 15 ACGGGCC 50 2.1827873E-11 45.000004 5 CGCCTTG 20 7.025436E-4 45.000004 15 GTTACGG 20 7.025436E-4 45.000004 2 CCCCGGG 25 3.8842998E-5 45.000004 17 ATGAGCG 20 7.025436E-4 45.000004 1 GTCGTAA 20 7.025436E-4 45.000004 41 >>END_MODULE