SRR2935956.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935956.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1028323
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTC	22068	2.1460183230366336	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGC	18505	1.799531859153204	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCG	16759	1.6297408499080541	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7385	0.7181595665953208	No Hit
GAACTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCT	4672	0.45433195600993076	No Hit
GCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC	4220	0.4103768951973261	TruSeq Adapter, Index 14 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATGCTGTGT	3759	0.3655466229968599	No Hit
GAATGACTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCT	3445	0.3350114701314665	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTC	2839	0.2760805700154524	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCATGCTGTGTCGTA	2581	0.25099117689675327	No Hit
CGCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTG	1692	0.16453974091798004	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1677	0.16308105527154407	No Hit
GAATGCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTT	1614	0.15695457555651288	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTT	1261	0.12262684001038585	No Hit
CCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC	1232	0.11980671442727625	TruSeq Adapter, Index 14 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGCT	1193	0.11601413174654267	TruSeq Adapter, Index 15 (95% over 22bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	1183	0.11504167464891867	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGATA	20	7.032938E-4	45.000004	11
CGAATGT	20	7.032938E-4	45.000004	45
TGTAGCG	65	0.0	45.000004	1
CGATCGC	35	1.2117562E-7	45.0	34
CGATGAA	3365	0.0	43.261513	19
CCGATGA	3335	0.0	42.908546	18
GATGAAT	3490	0.0	42.872494	20
CCCGTCG	295	0.0	42.711864	40
GTCGAAT	475	0.0	42.157898	43
CGTTTTT	3060	0.0	42.132355	1
CGGTCGA	145	0.0	41.896553	41
ATGAATG	3590	0.0	41.80362	21
ACCGATG	3435	0.0	41.65939	17
CACCGAT	3580	0.0	41.606148	16
TGAATGA	3610	0.0	41.509697	22
TACGGCT	2165	0.0	41.362587	7
CCGTCGA	240	0.0	41.249996	41
GGTCGAA	155	0.0	40.64516	42
CGCGTAA	50	1.0804797E-9	40.5	41
ACGGCTG	2215	0.0	40.428894	8