##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935956.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1028323 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.960793447195094 33.0 31.0 34.0 30.0 34.0 2 32.09693063366277 33.0 31.0 34.0 30.0 34.0 3 32.15051982694153 33.0 31.0 34.0 30.0 34.0 4 35.77912484695956 37.0 35.0 37.0 35.0 37.0 5 35.73689200766685 37.0 35.0 37.0 35.0 37.0 6 35.730649805557206 37.0 35.0 37.0 35.0 37.0 7 35.8797109468523 37.0 35.0 37.0 35.0 37.0 8 35.333702542878065 37.0 35.0 37.0 32.0 37.0 9 37.202456815611434 39.0 37.0 39.0 34.0 39.0 10 37.04491779333925 39.0 37.0 39.0 33.0 39.0 11 36.94462148566161 39.0 37.0 39.0 33.0 39.0 12 36.71279354833063 39.0 35.0 39.0 33.0 39.0 13 36.56029185382414 39.0 35.0 39.0 32.0 39.0 14 37.48609823956092 40.0 36.0 41.0 32.0 41.0 15 37.617207822833876 40.0 36.0 41.0 32.0 41.0 16 37.93347809977993 40.0 36.0 41.0 33.0 41.0 17 37.79555548208102 40.0 36.0 41.0 33.0 41.0 18 37.78223476475777 40.0 36.0 41.0 33.0 41.0 19 37.78194594499977 40.0 36.0 41.0 33.0 41.0 20 37.3039327137485 39.0 35.0 41.0 32.0 41.0 21 37.48116982699016 39.0 35.0 41.0 32.0 41.0 22 37.45118897467041 39.0 35.0 41.0 32.0 41.0 23 37.2808913152774 39.0 35.0 41.0 32.0 41.0 24 37.30018680900845 39.0 35.0 41.0 32.0 41.0 25 37.39992881614045 39.0 35.0 41.0 33.0 41.0 26 37.08606731542521 39.0 35.0 41.0 32.0 41.0 27 36.95320341954814 39.0 35.0 41.0 31.0 41.0 28 36.937214279949 39.0 35.0 41.0 31.0 41.0 29 36.860024525368004 39.0 35.0 41.0 31.0 41.0 30 36.79397815666867 39.0 35.0 41.0 31.0 41.0 31 36.80897539002823 39.0 35.0 41.0 31.0 41.0 32 36.47762035858383 39.0 35.0 41.0 30.0 41.0 33 36.39384123470933 39.0 35.0 41.0 30.0 41.0 34 36.074750832180165 39.0 35.0 41.0 29.0 41.0 35 35.966506632643636 39.0 35.0 41.0 29.0 41.0 36 35.923590156011294 39.0 35.0 41.0 28.0 41.0 37 35.74876181900045 39.0 35.0 41.0 28.0 41.0 38 35.70467353156547 39.0 35.0 41.0 27.0 41.0 39 35.57056294568925 39.0 35.0 41.0 27.0 41.0 40 35.49042275627405 38.0 35.0 41.0 26.0 41.0 41 35.41233736870613 38.0 35.0 41.0 25.0 41.0 42 35.32788433206298 38.0 35.0 41.0 26.0 41.0 43 35.29174977122947 38.0 35.0 41.0 26.0 41.0 44 35.40014275670193 38.0 35.0 40.0 26.0 41.0 45 35.36488437971338 38.0 35.0 40.0 26.0 41.0 46 35.31176974549825 38.0 35.0 40.0 26.0 41.0 47 35.09444795069253 38.0 35.0 40.0 26.0 41.0 48 35.073307705847284 38.0 35.0 40.0 25.0 41.0 49 35.10996253122803 38.0 35.0 40.0 26.0 41.0 50 34.949397222468036 37.0 34.0 40.0 25.0 41.0 51 33.99426250312402 36.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 5.0 8 18.0 9 19.0 10 27.0 11 23.0 12 23.0 13 23.0 14 34.0 15 53.0 16 81.0 17 154.0 18 430.0 19 1132.0 20 2519.0 21 4748.0 22 7401.0 23 9264.0 24 10534.0 25 11914.0 26 13141.0 27 13562.0 28 13583.0 29 14637.0 30 17454.0 31 21955.0 32 29078.0 33 41932.0 34 78239.0 35 76788.0 36 73900.0 37 104270.0 38 178409.0 39 302740.0 40 233.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 48.761624509030725 18.486312180122393 20.59761378477385 12.154449526073034 2 31.148092574025867 32.98807864844023 20.529833525069456 15.33399525246445 3 27.316417117967802 33.28331662327887 24.339920433560273 15.060345825193059 4 25.348358443796354 21.411852112614422 36.14234049029342 17.097448953295803 5 32.22090724412466 24.617556934931923 24.014633534405046 19.146902286538374 6 23.237445821983947 38.205797205741774 24.721026370119116 13.835730602155161 7 70.19399546640501 5.002708293016883 19.96376624854253 4.839529992035577 8 69.02957533771004 13.583475231031494 11.705757821229321 5.681191610029145 9 64.27367665607012 5.751597503897122 12.297789702262811 17.676936137769943 10 46.822642302078236 18.952313621303812 19.54026118252728 14.68478289409067 11 36.695085104582894 20.334077911317745 24.49298518072629 18.477851803373067 12 28.219538024531204 17.911201052587565 28.78521631821908 25.084044604662154 13 29.635143821542453 18.76171203016951 33.73239731096163 17.870746837326404 14 20.359556287275495 27.518688194273587 30.755025415166248 21.366730103284667 15 17.819595593991384 21.286113409891637 37.38309850115187 23.5111924949651 16 23.181335047451043 23.356960799281936 27.178814438654005 26.282889714613017 17 23.63838988333432 27.22451992224233 28.742330960213863 20.394759234209484 18 23.451678120590515 22.677602270881813 28.92486115743789 24.945858451089784 19 22.259542964613257 25.195196450920577 26.671191833694273 25.87406875077189 20 25.691830290677153 27.359205230263257 29.516406809922564 17.432557669137033 21 22.26810058707235 30.565493526839333 29.579130292719313 17.587275593369007 22 21.09891541859902 20.766140599792088 34.66216354199994 23.472780439608957 23 24.103029884579065 24.93837053143808 31.08138201712886 19.877217566853993 24 23.238904507630384 26.296212376850463 26.96837472272817 23.496508392790982 25 21.924628740191554 32.013773882330746 24.654413058931873 21.407184318545827 26 20.14892207993014 22.968172451651863 30.743550421414284 26.139355047003715 27 25.181290314424555 23.835993165571516 28.07104382572402 22.91167269427991 28 18.39003892745762 27.471621270748585 29.137051296139443 25.00128850565435 29 22.258181524676584 25.778767955204735 29.419744574418736 22.54330594569994 30 22.68586815621162 27.36951327549807 30.412137042544025 19.532481525746288 31 26.437996621684047 21.556748220160397 26.180878965072257 25.824376193083303 32 28.96726028689429 23.764614814605917 25.341940226952037 21.92618467154775 33 27.99859577195103 20.77032216531187 27.225686870759482 24.00539519197762 34 26.005350458951128 23.35054258243762 27.779014959307535 22.865091999303722 35 24.164002944600092 23.402277300031216 31.069420794828083 21.36429896054061 36 27.381377252089077 28.335163173438694 25.28923305226082 18.994226522211406 37 22.47396975463935 23.475308828062776 30.599724016675694 23.450997400622178 38 25.68609279380117 22.29941370561584 27.023318548743923 24.991174951839064 39 25.997279065040846 22.77270857502944 25.966257683626644 25.26375467630307 40 23.409862465392685 20.238582624331073 32.86992511107891 23.481629799197336 41 25.05623233167011 22.407356443452105 26.294170216945457 26.242241007932332 42 22.508200244475717 21.23904648636664 33.24772469350584 23.005028575651814 43 25.89779670395391 21.968000326745585 27.473371693524314 24.66083127577619 44 23.68808244102291 20.758263697301334 29.91861506549985 25.63503879617591 45 22.3884907757582 20.035630828056945 28.219149041692155 29.356729354492707 46 26.67692933057026 23.384675826564223 26.806752353103064 23.13164248976246 47 19.374262755962864 23.76033600337637 34.975294727434864 21.890106513225902 48 22.47319178896125 24.51369851690568 28.34381804160755 24.66929165252552 49 22.79371364833812 19.91844974779325 34.094832071246095 23.19300453262253 50 23.22538735397341 21.279889684466845 30.4248762305229 25.069846731036844 51 21.519794850450687 21.254314062799335 27.94744452861601 29.278446558133968 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 540.0 1 961.5 2 1383.0 3 6630.5 4 11878.0 5 7594.0 6 3310.0 7 3175.5 8 3041.0 9 3141.0 10 3241.0 11 3113.5 12 2986.0 13 2935.0 14 2884.0 15 2746.5 16 2609.0 17 2578.5 18 2548.0 19 2436.0 20 2324.0 21 2487.0 22 2650.0 23 3097.0 24 3544.0 25 4084.0 26 5348.5 27 6073.0 28 6993.0 29 7913.0 30 9157.0 31 10401.0 32 12443.0 33 14485.0 34 17382.0 35 20279.0 36 21205.5 37 22132.0 38 24224.0 39 26316.0 40 28927.5 41 31539.0 42 34845.0 43 38151.0 44 44369.5 45 50588.0 46 96297.0 47 142006.0 48 119058.0 49 96110.0 50 96146.0 51 96182.0 52 86463.5 53 76745.0 54 72167.5 55 67590.0 56 64780.0 57 61970.0 58 58899.0 59 55828.0 60 48791.0 61 41754.0 62 38341.5 63 34929.0 64 30216.0 65 25503.0 66 21953.5 67 18404.0 68 15644.5 69 12885.0 70 10922.5 71 8960.0 72 7549.5 73 6139.0 74 5019.0 75 3003.0 76 2107.0 77 1597.0 78 1087.0 79 764.0 80 441.0 81 275.0 82 109.0 83 133.5 84 158.0 85 100.0 86 42.0 87 33.5 88 25.0 89 16.0 90 7.0 91 5.0 92 3.0 93 1.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1028323.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.702482905499462 #Duplication Level Percentage of deduplicated Percentage of total 1 72.34165550599661 21.48726786022396 2 9.867654213997367 5.861876612172732 3 3.7297292548375522 3.3234665830186096 4 2.0549592759757114 2.441495710646645 5 1.294897591619034 1.9230836789718393 6 1.0022411636664794 1.7861430618594896 7 0.8430019082276893 1.7527474837905455 8 0.6922652807478654 1.6449598133987406 9 0.6211308007077505 1.6604214291091035 >10 7.426094822358061 44.08308552129533 >50 0.07993497664272493 1.5702671564154966 >100 0.03714816417843731 2.11880955765952 >500 0.002985120335759272 0.679374655209878 >1k 0.0049752005595987865 3.291262830807948 >5k 3.3168003730658577E-4 0.7275495691306482 >10k+ 9.950401119197573E-4 5.648188476289549 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTC 22068 2.1460183230366336 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGC 18505 1.799531859153204 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCG 16759 1.6297408499080541 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7385 0.7181595665953208 No Hit GAACTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCT 4672 0.45433195600993076 No Hit GCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC 4220 0.4103768951973261 TruSeq Adapter, Index 14 (95% over 21bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATGCTGTGT 3759 0.3655466229968599 No Hit GAATGACTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCT 3445 0.3350114701314665 No Hit GAATGATCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTC 2839 0.2760805700154524 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCATGCTGTGTCGTA 2581 0.25099117689675327 No Hit CGCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTG 1692 0.16453974091798004 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 1677 0.16308105527154407 No Hit GAATGCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTT 1614 0.15695457555651288 No Hit CGTTTCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTT 1261 0.12262684001038585 No Hit CCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC 1232 0.11980671442727625 TruSeq Adapter, Index 14 (95% over 21bp) CTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGCT 1193 0.11601413174654267 TruSeq Adapter, Index 15 (95% over 22bp) GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC 1183 0.11504167464891867 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.862285488119978E-4 0.0 0.0 0.12126540007371225 0.0 2 4.862285488119978E-4 0.0 0.0 0.735761040062315 0.0 3 5.834742585743973E-4 0.0 0.0 1.0707725101937815 0.0 4 5.834742585743973E-4 0.0 0.0 1.9028068029208722 0.0 5 5.834742585743973E-4 0.0 0.0 5.031298531687028 0.0 6 5.834742585743973E-4 0.0 0.0 6.1360097945878875 0.0 7 5.834742585743973E-4 0.0 0.0 7.311710425615298 0.0 8 5.834742585743973E-4 0.0 0.0 8.704074497993334 0.0 9 6.807199683367969E-4 0.0 0.0 9.440516258023987 0.0 10 6.807199683367969E-4 0.0 0.0 12.128290430146947 0.0 11 6.807199683367969E-4 0.0 0.0 13.30933957521129 0.0 12 6.807199683367969E-4 0.0 0.0 16.09358149141855 0.0 13 6.807199683367969E-4 0.0 0.0 16.58593651994558 0.0 14 6.807199683367969E-4 0.0 0.0 16.93446514373402 0.0 15 6.807199683367969E-4 0.0 0.0 17.477290695627737 0.0 16 6.807199683367969E-4 0.0 0.0 18.009516465157347 0.0 17 6.807199683367969E-4 0.0 0.0 18.518306018634224 0.0 18 6.807199683367969E-4 0.0 0.0 19.011050030000302 0.0 19 6.807199683367969E-4 0.0 0.0 19.793002782199757 0.0 20 6.807199683367969E-4 0.0 0.0 20.237804658652973 0.0 21 6.807199683367969E-4 0.0 0.0 20.68630187207716 0.0 22 6.807199683367969E-4 0.0 0.0 21.2779447702716 0.0 23 6.807199683367969E-4 0.0 0.0 21.712244110070476 0.0 24 6.807199683367969E-4 0.0 0.0 22.109006605901065 0.0 25 6.807199683367969E-4 0.0 0.0 22.46959369770004 0.0 26 6.807199683367969E-4 0.0 0.0 22.823081852686364 0.0 27 6.807199683367969E-4 0.0 0.0 23.31932670960389 0.0 28 6.807199683367969E-4 0.0 0.0 23.645488820146976 0.0 29 7.779656780991964E-4 0.0 0.0 24.040792630331133 0.0 30 7.779656780991964E-4 0.0 0.0 24.57817242247815 0.0 31 8.75211387861596E-4 0.0 0.0 24.979894449506624 0.0 32 8.75211387861596E-4 0.0 0.0 25.376559699627453 0.0 33 8.75211387861596E-4 0.0 0.0 25.74191183120479 0.0 34 8.75211387861596E-4 0.0 0.0 26.140716486940388 0.0 35 8.75211387861596E-4 0.0 0.0 26.578224935161423 0.0 36 8.75211387861596E-4 0.0 0.0 26.973820482474864 0.0 37 9.724570976239956E-4 0.0 0.0 27.40131262259037 0.0 38 9.724570976239956E-4 0.0 0.0 27.92682843814638 0.0 39 9.724570976239956E-4 0.0 0.0 28.91640078068856 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGCGATA 20 7.032938E-4 45.000004 11 CGAATGT 20 7.032938E-4 45.000004 45 TGTAGCG 65 0.0 45.000004 1 CGATCGC 35 1.2117562E-7 45.0 34 CGATGAA 3365 0.0 43.261513 19 CCGATGA 3335 0.0 42.908546 18 GATGAAT 3490 0.0 42.872494 20 CCCGTCG 295 0.0 42.711864 40 GTCGAAT 475 0.0 42.157898 43 CGTTTTT 3060 0.0 42.132355 1 CGGTCGA 145 0.0 41.896553 41 ATGAATG 3590 0.0 41.80362 21 ACCGATG 3435 0.0 41.65939 17 CACCGAT 3580 0.0 41.606148 16 TGAATGA 3610 0.0 41.509697 22 TACGGCT 2165 0.0 41.362587 7 CCGTCGA 240 0.0 41.249996 41 GGTCGAA 155 0.0 40.64516 42 CGCGTAA 50 1.0804797E-9 40.5 41 ACGGCTG 2215 0.0 40.428894 8 >>END_MODULE