SRR2935953.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935953.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	449439
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGC	1567	0.348656881134036	TruSeq Adapter, Index 13 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGC	1563	0.3477668827137832	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTC	1546	0.3439843894277088	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCG	1369	0.3046019593315222	No Hit
CCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGC	1329	0.2957019751289941	TruSeq Adapter, Index 13 (95% over 21bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1011	0.22494710071889623	No Hit
CTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGCT	835	0.18578717022777286	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	575	0.1279372729113406	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	552	0.12281978199488695	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGTA	20	7.0286973E-4	45.0	41
CGAAATA	20	7.0286973E-4	45.0	40
GGCGTAG	20	7.0286973E-4	45.0	1
ATACTCC	25	3.8870017E-5	45.0	28
GCCGATT	35	1.2097189E-7	45.0	9
TTCCCGA	20	7.0286973E-4	45.0	20
TGACCGT	25	3.8870017E-5	45.0	20
TCGTAGA	20	7.0286973E-4	45.0	12
CGTCATA	35	1.2097189E-7	45.0	38
TAATGCG	25	3.8870017E-5	45.0	1
AGTACGG	20	7.0286973E-4	45.0	2
GCGTACG	20	7.0286973E-4	45.0	1
TACCGGT	20	7.0286973E-4	45.0	40
CGCCAAT	20	7.0286973E-4	45.0	14
CCCGATC	20	7.0286973E-4	45.0	41
TAATCTA	20	7.0286973E-4	45.0	17
CTAGCGG	35	1.2097189E-7	45.0	2
AGGGCGT	30	2.16254E-6	44.999996	6
AATGCGG	80	0.0	42.1875	2
ACGGGCC	55	6.002665E-11	40.909092	5