SRR2935952.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935952.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	464391
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTC	4645	1.0002347160044014	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGC	4512	0.9715950567517457	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCG	3997	0.8606971280666507	No Hit
GCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC	2608	0.5615957242926758	No Hit
CCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC	1481	0.3189122958885939	No Hit
CTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGCT	1110	0.2390227200785545	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATGCCTGTT	940	0.20241563682328037	No Hit
GAATGACTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCT	846	0.18217407314095235	No Hit
GAACTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCT	794	0.17097661238051556	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCATGCCTGTTCGTA	626	0.13480020069295054	No Hit
TCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC	621	0.13372352177367777	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTC	599	0.1289861345288776	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	562	0.12101871052625911	No Hit
ACTGTCTCTTATACACATCTGACGCATGCCTGTTCGTATGCCGTCTTCTGC	495	0.10659121300800403	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	469	0.10099248262778564	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTAG	20	7.0289377E-4	45.000004	19
ATAGAAT	20	7.0289377E-4	45.000004	10
GCGTTCC	20	7.0289377E-4	45.000004	20
CGTAAGG	40	6.7993824E-9	45.000004	2
TATAGCG	40	6.7993824E-9	45.000004	1
TAAGCTA	20	7.0289377E-4	45.000004	40
CCCGGAA	20	7.0289377E-4	45.000004	32
CGGAATT	25	3.8872022E-5	45.0	33
CCGATCG	70	0.0	45.0	40
ATGTGCG	25	3.8872022E-5	45.0	1
GGCGTAG	50	2.1827873E-11	45.0	1
CACGCTA	25	3.8872022E-5	45.0	19
CGTCTCG	25	3.8872022E-5	45.0	23
AAAACGG	25	3.8872022E-5	45.0	2
TCGTACG	75	0.0	45.0	30
CGATCGA	70	0.0	45.0	41
CAATAGT	70	0.0	45.0	16
CGATTGT	30	2.1626965E-6	44.999996	10
CCGATGA	505	0.0	42.326733	18
CTCGTAC	80	0.0	42.187504	29