SRR2935950.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935950.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	537111
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC	2154	0.40103442305221826	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC	1837	0.3420149652492688	Illumina Single End Adapter 2 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGC	1820	0.3388498839159876	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCG	1705	0.3174390396026147	No Hit
GAATCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTC	1676	0.31203978321054676	No Hit
CTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGCT	1215	0.22621022470215654	Illumina Single End Adapter 2 (95% over 22bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1082	0.2014481178006036	No Hit
TCTGTCTCTTATACACATCTGACGCGATTATGCTCGTATGCCGTCTTCTGC	692	0.12883742839003484	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	631	0.11748037184120229	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	612	0.11394292799812328	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	556	0.10351677772378523	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGATC	45	3.8380676E-10	45.000004	26
AGGTACG	20	7.029927E-4	45.0	1
CGTATTA	20	7.029927E-4	45.0	18
CACGGGT	20	7.029927E-4	45.0	4
AACTTAG	20	7.029927E-4	45.0	1
GCTATCG	20	7.029927E-4	45.0	1
TAAACCG	20	7.029927E-4	45.0	1
TAAGTCG	25	3.8880215E-5	45.0	24
ATATGCG	25	3.8880215E-5	45.0	1
CCGTATT	20	7.029927E-4	45.0	17
CCCCGTA	20	7.029927E-4	45.0	15
TACGCGG	35	1.2103192E-7	45.0	2
CTACGCG	20	7.029927E-4	45.0	1
CGGGATC	85	0.0	45.0	6
ACTCGAG	25	3.8880215E-5	45.0	1
CATCGTT	25	3.8880215E-5	45.0	36
AGTTACG	25	3.8880215E-5	45.0	1
GGCATAG	55	1.8189894E-12	45.0	1
ACCGTTA	20	7.029927E-4	45.0	25
CAATGCG	25	3.8880215E-5	45.0	1