SRR2935948.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935948.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	425777
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC	1972	0.4631532468874552	No Hit
GCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC	1746	0.4100738179845318	No Hit
CTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGCT	1281	0.3008617186931187	Illumina Single End Adapter 1 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTC	903	0.21208285088203446	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGC	787	0.18483854224159596	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCG	737	0.17309530575864832	No Hit
TCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC	698	0.16393558130194916	No Hit
CGCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTG	534	0.12541776563788087	No Hit
ACTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC	466	0.10944696402107207	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	445	0.10451480469823406	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCC	427	0.10028723956437291	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTAGCG	30	2.162269E-6	45.000004	1
TGACGAA	30	2.162269E-6	45.000004	28
CTACGAA	30	2.162269E-6	45.000004	11
GACGGCG	30	2.162269E-6	45.000004	9
CGAACGG	55	1.8189894E-12	45.0	2
GATAACG	25	3.8866543E-5	45.0	1
CTTCCGG	25	3.8866543E-5	45.0	2
GCGAACG	55	1.8189894E-12	45.0	1
GTTTACG	20	7.028279E-4	45.0	1
TAGAACG	20	7.028279E-4	45.0	1
ACGGGTC	20	7.028279E-4	45.0	5
CGTTAGT	20	7.028279E-4	45.0	43
ATTCCGC	25	3.8866543E-5	45.0	41
TCGTGCG	20	7.028279E-4	45.0	1
TCTACGG	25	3.8866543E-5	45.0	2
CGGATAT	20	7.028279E-4	45.0	6
GTCGTAG	20	7.028279E-4	45.0	1
TAGGACG	20	7.028279E-4	45.0	1
ATACGAG	45	3.8380676E-10	45.0	1
TTCGCGG	25	3.8866543E-5	45.0	2