SRR2935947.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935947.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	681865
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1463	0.2145586003094454	No Hit
GCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC	1406	0.20619917432336313	No Hit
CCTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGC	1155	0.16938836866535165	No Hit
CTGTCTCTTATACACATCTGACGCACCCGTAATCGTATGCCGTCTTCTGCT	907	0.13301753279608133	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGACA	40	6.8084773E-9	45.0	26
CGCATGT	20	7.031266E-4	45.0	38
ATCCGTG	20	7.031266E-4	45.0	10
TACGCGC	20	7.031266E-4	45.0	34
TCGTAAG	55	1.8189894E-12	45.0	1
CGCACGA	20	7.031266E-4	45.0	40
CGCATCG	25	3.8891318E-5	44.999996	21
GGTTAAC	25	3.8891318E-5	44.999996	9
AATACGG	55	6.002665E-11	40.909092	2
TTTGCGG	135	0.0	40.0	2
TACGGGA	320	0.0	38.671875	4
TAGAACG	35	6.2445524E-6	38.571426	1
TCTACGG	35	6.2445524E-6	38.571426	2
GGCGTAG	65	9.094947E-12	38.076927	1
TAGCGCG	30	1.1394351E-4	37.499996	1
TAACGCC	30	1.1394351E-4	37.499996	12
TCTAACG	30	1.1394351E-4	37.499996	32
CGTACTA	30	1.1394351E-4	37.499996	37
GCGATAC	30	1.1394351E-4	37.499996	9
TGTAGCG	30	1.1394351E-4	37.499996	1