##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935946.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 380677 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.92139530363011 33.0 31.0 34.0 30.0 34.0 2 32.04956432881419 33.0 31.0 34.0 30.0 34.0 3 32.12377159639274 33.0 31.0 34.0 30.0 34.0 4 35.714308981104715 37.0 35.0 37.0 33.0 37.0 5 35.75616598848893 37.0 35.0 37.0 35.0 37.0 6 35.77440980148525 37.0 35.0 37.0 35.0 37.0 7 35.973770414288225 37.0 35.0 37.0 35.0 37.0 8 35.64460421827428 37.0 35.0 37.0 33.0 37.0 9 37.44906574339926 39.0 37.0 39.0 34.0 39.0 10 37.040837770603424 39.0 37.0 39.0 33.0 39.0 11 36.993734846076855 39.0 37.0 39.0 33.0 39.0 12 36.99672951084515 39.0 37.0 39.0 33.0 39.0 13 36.97060500109016 39.0 37.0 39.0 33.0 39.0 14 38.11572277810322 40.0 37.0 41.0 33.0 41.0 15 38.2439049377819 40.0 37.0 41.0 34.0 41.0 16 38.36217318093817 40.0 37.0 41.0 34.0 41.0 17 38.340222813566356 40.0 37.0 41.0 34.0 41.0 18 38.359829987101925 40.0 37.0 41.0 34.0 41.0 19 38.374472321679534 40.0 37.0 41.0 34.0 41.0 20 38.20006724861234 40.0 37.0 41.0 34.0 41.0 21 38.237813159187446 40.0 37.0 41.0 34.0 41.0 22 38.219306656299175 40.0 37.0 41.0 34.0 41.0 23 38.238372688657314 40.0 37.0 41.0 34.0 41.0 24 38.15623481324062 40.0 37.0 41.0 34.0 41.0 25 38.10870370419017 40.0 37.0 41.0 34.0 41.0 26 37.96067269627532 40.0 37.0 41.0 34.0 41.0 27 37.881739637540484 40.0 36.0 41.0 33.0 41.0 28 37.91093499213244 40.0 37.0 41.0 33.0 41.0 29 37.91641733017755 40.0 37.0 41.0 34.0 41.0 30 37.82215368934819 40.0 36.0 41.0 33.0 41.0 31 37.91509074622318 40.0 37.0 41.0 34.0 41.0 32 37.800150783997985 40.0 36.0 41.0 33.0 41.0 33 37.80097037646088 40.0 37.0 41.0 33.0 41.0 34 37.80828628995185 40.0 37.0 41.0 33.0 41.0 35 37.798769035166295 40.0 37.0 41.0 33.0 41.0 36 37.727277981070564 40.0 37.0 41.0 33.0 41.0 37 37.67796846145157 40.0 36.0 41.0 33.0 41.0 38 37.61800161291594 40.0 36.0 41.0 33.0 41.0 39 37.595278937261774 40.0 36.0 41.0 33.0 41.0 40 37.51973195123425 40.0 36.0 41.0 33.0 41.0 41 37.46932176096796 40.0 36.0 41.0 33.0 41.0 42 37.4741500011821 40.0 36.0 41.0 33.0 41.0 43 37.4011169574206 40.0 36.0 41.0 33.0 41.0 44 37.32051844477076 40.0 35.0 41.0 33.0 41.0 45 37.24070012110004 39.0 35.0 41.0 32.0 41.0 46 37.18538288365202 39.0 35.0 41.0 32.0 41.0 47 37.13587634661406 39.0 35.0 41.0 32.0 41.0 48 37.13382999235572 39.0 35.0 41.0 32.0 41.0 49 37.13947519813385 39.0 35.0 41.0 32.0 41.0 50 36.98536029232131 39.0 35.0 41.0 32.0 41.0 51 36.07697601903976 38.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 1.0 9 3.0 10 7.0 11 3.0 12 1.0 13 10.0 14 5.0 15 9.0 16 24.0 17 35.0 18 59.0 19 108.0 20 204.0 21 381.0 22 606.0 23 896.0 24 1245.0 25 1607.0 26 2217.0 27 2512.0 28 2996.0 29 3681.0 30 4850.0 31 6458.0 32 8624.0 33 11945.0 34 21110.0 35 29605.0 36 26049.0 37 39477.0 38 75010.0 39 140830.0 40 108.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.07326158396751 21.287338084517845 25.394494545244395 10.24490578627025 2 30.82271847261589 25.440202586444677 25.18329187211205 18.55378706882738 3 30.500660665078268 26.460490126800412 26.333873598877787 16.704975609243533 4 27.950992573756757 25.01096730298915 28.102564641415164 18.935475481838935 5 26.10428263330855 29.281779566404065 25.159649781836045 19.454288018451336 6 24.278587884216805 34.793538879417454 25.32882207225548 15.599051164110255 7 76.64450439611534 5.85903535017876 11.57332856988996 5.923131683815938 8 76.149071259887 6.421454408855802 10.078097704878413 7.351376626378793 9 70.89895107926142 6.35578193586689 12.305707988662304 10.439558996209385 10 39.54980206316641 23.87089317190164 21.12105538290992 15.45824938202203 11 27.012138899907274 25.911730942505063 26.567142222934404 20.508987934653263 12 24.477706822319185 21.86052742876507 32.62687265056728 21.03489309834847 13 22.57924697315572 24.87699545809177 33.86414204167838 18.679615527074134 14 18.912621461238793 29.443071160064832 30.28709378291833 21.35721359577805 15 17.808798535241163 26.663812103174084 35.68300685357928 19.844382508005474 16 18.83066221494863 27.485506085211348 30.717379825941677 22.966451873898343 17 19.12329875458722 27.41720671330288 28.593006669696358 24.866487862413543 18 20.08553182882076 26.246660554748512 31.336802591173097 22.33100502525763 19 19.905589252831142 27.850382345137742 28.827326053320796 23.416702348710324 20 21.22613133969218 27.625782487515664 30.760198278330446 20.38788789446171 21 21.59599870756573 28.789761398771134 29.628267533893567 19.98597235976957 22 19.409893426710834 24.650294081334046 29.274424249429305 26.665388242525818 23 19.066295048032845 26.469158893234944 29.918539864504556 24.54600619422765 24 21.078499620413105 24.705984338428642 30.27606080745619 23.939455233702063 25 17.800392458698582 28.621114488135614 28.09678546379214 25.48170758937367 26 17.932525474352275 27.629722835895 29.005955179850634 25.431796509902092 27 20.93743514843292 27.939959598294617 27.368609083291084 23.753996169981377 28 15.917694003052457 26.15524447234795 30.230090076363954 27.69697144823564 29 18.112205360449934 24.03980277242912 28.958408309406664 28.889583557714282 30 19.16585451708404 27.55039048852439 29.403404986379527 23.88035000801204 31 19.195801164766984 26.008663512636698 26.56320187455507 28.232333448041253 32 19.109376190313572 26.960651681083963 26.644635741061318 27.285336387541143 33 18.266141637135945 25.286003619866708 28.764805859035352 27.68304888396199 34 16.715745894813715 22.735284768977372 31.218066760009144 29.33090257619977 35 16.473808504322562 23.71984648402714 30.63647133921934 29.169873672430956 36 18.045219438001244 24.83943080354211 29.184321616488518 27.931028141968124 37 17.223788145855938 24.73750712546332 32.07942691573171 25.959277812949033 38 16.984214964392386 24.534447838981606 29.39158394124152 29.089753255384487 39 19.436425105798357 21.761230649605835 31.826719239670375 26.975625004925437 40 19.013757069641716 21.681110232559362 34.73653517286308 24.568597524935836 41 16.487205688812303 24.412034349330273 30.43840316068478 28.66235680117265 42 18.586623305321833 22.42531069646971 31.205194955303316 27.78287104290514 43 20.505310276165883 22.971705671737457 28.188201546192705 28.334782505903956 44 19.042127577972927 22.96119807605923 28.791600228014826 29.205074117953018 45 19.507614066518332 21.481203224781115 29.073203792191283 29.937978916509273 46 21.980839399280754 22.69588128518403 30.543479117467037 24.779800198068177 47 16.702874090107887 21.848706383627064 34.81928248882911 26.629137037435935 48 17.54216829490618 21.219301402501333 32.3578782012047 28.88065210138779 49 19.38703940611069 19.35761813821166 33.96554033997326 27.289802115704394 50 18.747126829306733 19.50314833835509 32.62161885272817 29.12810597961001 51 17.702934508783034 19.332137218691962 29.632470572164856 33.332457700360145 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 198.0 1 269.0 2 340.0 3 626.0 4 912.0 5 654.5 6 397.0 7 404.0 8 411.0 9 447.5 10 484.0 11 493.5 12 503.0 13 462.5 14 422.0 15 426.5 16 431.0 17 485.0 18 539.0 19 513.0 20 487.0 21 691.5 22 896.0 23 1186.5 24 1477.0 25 1677.5 26 2306.0 27 2734.0 28 3041.5 29 3349.0 30 4109.0 31 4869.0 32 5713.5 33 6558.0 34 7784.0 35 9010.0 36 10096.5 37 11183.0 38 12254.5 39 13326.0 40 14646.0 41 15966.0 42 19353.5 43 22741.0 44 25879.5 45 29018.0 46 38476.0 47 47934.0 48 50318.5 49 52703.0 50 50745.5 51 48788.0 52 39749.0 53 30710.0 54 26247.0 55 21784.0 56 18219.0 57 14654.0 58 12922.5 59 11191.0 60 9905.5 61 8620.0 62 7315.5 63 6011.0 64 5247.0 65 4483.0 66 3576.5 67 2670.0 68 2047.5 69 1425.0 70 1081.0 71 737.0 72 599.5 73 462.0 74 326.0 75 163.0 76 136.0 77 84.5 78 33.0 79 18.0 80 3.0 81 2.0 82 1.0 83 3.5 84 6.0 85 3.5 86 1.0 87 1.0 88 1.0 89 1.5 90 2.0 91 1.0 92 0.0 93 1.0 94 2.0 95 1.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 380677.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.18152753998983 #Duplication Level Percentage of deduplicated Percentage of total 1 68.79695175742953 22.827879494064995 2 13.238296079438538 8.785337718848586 3 5.1237927468576965 5.100458104171764 4 2.6671888642103427 3.540056030085988 5 1.5263285040222943 2.5322955645643614 6 1.0298980093762569 2.050415349689938 7 0.724916031344122 1.6837674880757578 8 0.5900862647930297 1.5663970916959715 9 0.45132469488298416 1.3478078513463518 >10 5.680576528945772 40.56719321272295 >50 0.09967320017490017 2.141548747380766 >100 0.06458823371333532 4.055290048320361 >500 7.973856013992013E-4 0.1764780101931024 >1k 0.00558169920979441 3.625075288839125 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGC 2909 0.7641648956989784 TruSeq Adapter, Index 27 (96% over 25bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGC 2352 0.6178466258796828 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCG 2136 0.5611056092172629 No Hit GAATCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTC 2024 0.5316843413182304 TruSeq Adapter, Index 27 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGC 1856 0.48755243946968163 TruSeq Adapter, Index 27 (96% over 25bp) CTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGCT 1410 0.3703927476574629 TruSeq Adapter, Index 27 (100% over 25bp) TCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGC 1014 0.26636755044302646 TruSeq Adapter, Index 27 (96% over 25bp) ACTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTGC 667 0.17521415793441683 TruSeq Adapter, Index 27 (100% over 24bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 495 0.13003149651804546 No Hit GAATGACTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCT 487 0.1279299773824003 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCACCTTTCT 483 0.12687921781457773 No Hit GCCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTG 458 0.12031197051568653 TruSeq Adapter, Index 27 (95% over 24bp) ACCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTG 451 0.118473141271997 TruSeq Adapter, Index 27 (100% over 23bp) CGCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTG 449 0.1179477614880857 TruSeq Adapter, Index 27 (100% over 23bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCC 401 0.10533864667421461 No Hit AGCTGTCTCTTATACACATCTGACGCCACCTTTCTCGTATGCCGTCTTCTG 389 0.10218636797074684 TruSeq Adapter, Index 27 (100% over 23bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.880696758669423E-4 0.0 0.0 0.3921960086897816 0.0 2 7.880696758669423E-4 0.0 0.0 2.171920026689293 0.0 3 7.880696758669423E-4 0.0 0.0 3.0151545798669215 0.0 4 7.880696758669423E-4 0.0 0.0 4.137103108409492 0.0 5 7.880696758669423E-4 0.0 0.0 7.271781589116232 0.0 6 7.880696758669423E-4 0.0 0.0 8.622270323660215 0.0 7 7.880696758669423E-4 0.0 0.0 10.143770177867326 0.0 8 7.880696758669423E-4 0.0 0.0 12.393446412575491 0.0 9 7.880696758669423E-4 0.0 0.0 13.125300451563925 0.0 10 7.880696758669423E-4 0.0 0.0 15.340827000317855 0.0 11 7.880696758669423E-4 0.0 0.0 17.828762967029792 0.0 12 7.880696758669423E-4 0.0 0.0 20.243933833670013 0.0 13 7.880696758669423E-4 0.0 0.0 20.996540374122944 0.0 14 7.880696758669423E-4 0.0 0.0 21.294430711600647 0.0 15 7.880696758669423E-4 0.0 0.0 21.921208793806823 0.0 16 7.880696758669423E-4 0.0 0.0 23.189475592168687 0.0 17 7.880696758669423E-4 0.0 0.0 24.6807661088009 0.0 18 7.880696758669423E-4 0.0 0.0 26.263472707833674 0.0 19 7.880696758669423E-4 0.0 0.0 27.351534240313967 0.0 20 7.880696758669423E-4 0.0 0.0 28.282244527512827 0.0 21 7.880696758669423E-4 0.0 0.0 29.361899983450538 0.0 22 7.880696758669423E-4 0.0 0.0 30.4625706307447 0.0 23 7.880696758669423E-4 0.0 0.0 31.558250170091704 0.0 24 7.880696758669423E-4 0.0 0.0 32.42249991462579 0.0 25 7.880696758669423E-4 0.0 0.0 33.1929693677317 0.0 26 7.880696758669423E-4 0.0 0.0 33.88384378357505 0.0 27 7.880696758669423E-4 0.0 0.0 34.556592596873465 0.0 28 0.0010507595678225898 0.0 0.0 35.257974608395045 0.0 29 0.0010507595678225898 0.0 0.0 35.964610417755736 0.0 30 0.0010507595678225898 0.0 0.0 36.77133107595153 0.0 31 0.0015761393517338847 0.0 0.0 37.5071254633193 0.0 32 0.0015761393517338847 0.0 0.0 38.18854304305225 0.0 33 0.0015761393517338847 0.0 0.0 38.842903563913765 0.0 34 0.0015761393517338847 0.0 0.0 39.50278057250635 0.0 35 0.0015761393517338847 0.0 0.0 40.215458249382024 0.0 36 0.001838829243689532 0.0 0.0 40.882165195165456 0.0 37 0.001838829243689532 0.0 0.0 41.528119639484395 0.0 38 0.001838829243689532 0.0 0.0 42.16908297585617 0.0 39 0.001838829243689532 0.0 0.0 42.83500185196374 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCAAG 65 0.0 45.000004 1 CGAAAGG 65 0.0 45.000004 2 GAATCGG 30 2.1616615E-6 45.000004 2 TTACGAG 35 1.209064E-7 45.000004 1 ACCGGCA 20 7.0273364E-4 45.0 37 GTCGACG 20 7.0273364E-4 45.0 1 CACGGGT 20 7.0273364E-4 45.0 4 TTTCGGC 20 7.0273364E-4 45.0 41 GCGCACT 20 7.0273364E-4 45.0 28 ACCTCCG 25 3.8858732E-5 45.0 15 CGTTAAT 20 7.0273364E-4 45.0 17 CCCCGTA 20 7.0273364E-4 45.0 40 GAGCGAA 20 7.0273364E-4 45.0 10 AACGCTA 20 7.0273364E-4 45.0 43 GTTCCGC 25 3.8858732E-5 45.0 13 GATGCGC 20 7.0273364E-4 45.0 12 ACGCTAC 20 7.0273364E-4 45.0 44 TTCGGTA 20 7.0273364E-4 45.0 25 TACTAGG 25 3.8858732E-5 45.0 2 CCGAACA 20 7.0273364E-4 45.0 39 >>END_MODULE